Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH1 entry

There are 6 chains in PDB entry 8DH1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 2	ALA 883
A	G 3	A 9
A	A 11	C 18
C	G 1	U 8
D	C 3	C 8
E	ALA 18	VAL 426

There are149 helices in PDB entry 8DH1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	11	17	Right-handed alpha
Helix 2	AA2	B	17	29	Right-handed alpha
Helix 3	AA3	B	29	61	Right-handed alpha
Helix 4	AA4	B	63	67	Right-handed 310
Helix 5	AA5	B	70	95	Right-handed alpha
Helix 6	AA6	B	104	108	Right-handed 310
Helix 7	AA7	B	110	128	Right-handed alpha
Helix 8	AA8	B	133	157	Right-handed alpha
Helix 9	AA9	B	163	173	Right-handed alpha
Helix 10	AB1	B	175	193	Right-handed alpha
Helix 11	AB2	B	205	224	Right-handed alpha
Helix 12	AB3	B	247	264	Right-handed alpha
Helix 13	AB4	B	301	306	Right-handed alpha
Helix 14	AB5	B	307	309	Right-handed 310
Helix 15	AB6	B	313	325	Right-handed alpha
Helix 16	AB7	B	331	342	Right-handed alpha
Helix 17	AB8	B	373	408	Right-handed alpha
Helix 18	AB9	B	437	443	Right-handed alpha
Helix 19	AC1	B	452	469	Right-handed alpha
Helix 20	AC2	B	474	485	Right-handed alpha
Helix 21	AC3	B	485	495	Right-handed alpha
Helix 22	AC4	B	501	505	Right-handed 310
Helix 23	AC5	B	507	525	Right-handed alpha
Helix 24	AC6	B	540	551	Right-handed alpha
Helix 25	AC7	B	552	559	Right-handed alpha
Helix 26	AC8	B	569	588	Right-handed alpha
Helix 27	AC9	B	612	624	Right-handed alpha
Helix 28	AD1	B	626	636	Right-handed alpha
Helix 29	AD2	B	642	654	Right-handed alpha
Helix 30	AD3	B	654	661	Right-handed alpha
Helix 31	AD4	B	669	689	Right-handed alpha
Helix 32	AD5	B	689	707	Right-handed alpha
Helix 33	AD6	B	770	801	Right-handed alpha
Helix 34	AD7	B	817	819	Right-handed 310
Helix 35	AD8	B	820	839	Right-handed alpha
Helix 36	AD9	B	840	850	Right-handed alpha
Helix 37	AE1	B	851	853	Right-handed 310
Helix 38	AE2	B	871	876	Right-handed 310
Helix 39	AE3	E	21	29	Right-handed alpha
Helix 40	AE4	E	29	60	Right-handed alpha
Helix 41	AE5	E	70	76	Right-handed alpha
Helix 42	AE6	E	77	87	Right-handed alpha
Helix 43	AE7	E	110	127	Right-handed alpha
Helix 44	AE8	E	138	157	Right-handed alpha
Helix 45	AE9	E	162	171	Right-handed alpha
Helix 46	AF1	E	175	194	Right-handed alpha
Helix 47	AF2	E	205	224	Right-handed alpha
Helix 48	AF3	E	247	252	Right-handed alpha
Helix 49	AF4	E	252	264	Right-handed alpha
Helix 50	AF5	E	301	307	Right-handed alpha
Helix 51	AF6	E	313	325	Right-handed alpha
Helix 52	AF7	E	331	345	Right-handed alpha
Helix 53	AF8	E	378	408	Right-handed alpha
Helix 54	AF9	E	437	443	Right-handed alpha
Helix 55	AG1	E	452	468	Right-handed alpha
Helix 56	AG2	E	474	485	Right-handed alpha
Helix 57	AG3	E	485	495	Right-handed alpha
Helix 58	AG4	E	501	505	Right-handed 310
Helix 59	AG5	E	507	525	Right-handed alpha
Helix 60	AG6	E	540	550	Right-handed alpha
Helix 61	AG7	E	552	559	Right-handed alpha
Helix 62	AG8	E	569	589	Right-handed alpha
Helix 63	AG9	E	612	624	Right-handed alpha
Helix 64	AH1	E	626	636	Right-handed alpha
Helix 65	AH2	E	637	640	Right-handed 310
Helix 66	AH3	E	642	654	Right-handed alpha
Helix 67	AH4	E	654	660	Right-handed alpha
Helix 68	AH5	E	669	689	Right-handed alpha
Helix 69	AH6	E	689	708	Right-handed alpha
Helix 70	AH7	E	770	801	Right-handed alpha
Helix 71	AH8	E	817	839	Right-handed alpha
Helix 72	AH9	E	840	850	Right-handed alpha
Helix 73	AI1	E	851	853	Right-handed 310
Helix 74	AI2	E	871	875	Right-handed 310
Helix 75	AI3	I	10	14	Right-handed 310
Helix 76	AI4	I	21	29	Right-handed alpha
Helix 77	AI5	I	29	61	Right-handed alpha
Helix 78	AI6	I	70	94	Right-handed alpha
Helix 79	AI7	I	101	106	Right-handed alpha
Helix 80	AI8	I	110	128	Right-handed alpha
Helix 81	AI9	I	133	153	Right-handed alpha
Helix 82	AJ1	I	159	173	Right-handed alpha
Helix 83	AJ2	I	175	194	Right-handed alpha
Helix 84	AJ3	I	199	204	Right-handed alpha
Helix 85	AJ4	I	205	224	Right-handed alpha
Helix 86	AJ5	I	247	264	Right-handed alpha
Helix 87	AJ6	I	301	307	Right-handed alpha
Helix 88	AJ7	I	313	325	Right-handed alpha
Helix 89	AJ8	I	331	342	Right-handed alpha
Helix 90	AJ9	I	379	383	Right-handed alpha
Helix 91	AK1	I	383	408	Right-handed alpha
Helix 92	AK2	I	437	443	Right-handed alpha
Helix 93	AK3	I	452	468	Right-handed alpha
Helix 94	AK4	I	474	485	Right-handed alpha
Helix 95	AK5	I	485	495	Right-handed alpha
Helix 96	AK6	I	499	505	Right-handed 310
Helix 97	AK7	I	507	525	Right-handed alpha
Helix 98	AK8	I	540	550	Right-handed alpha
Helix 99	AK9	I	552	559	Right-handed alpha
Helix 100	AL1	I	569	585	Right-handed alpha
Helix 101	AL2	I	612	624	Right-handed alpha
Helix 102	AL3	I	630	636	Right-handed alpha
Helix 103	AL4	I	642	654	Right-handed alpha
Helix 104	AL5	I	654	662	Right-handed alpha
Helix 105	AL6	I	669	689	Right-handed alpha
Helix 106	AL7	I	689	707	Right-handed alpha
Helix 107	AL8	I	770	802	Right-handed alpha
Helix 108	AL9	I	817	819	Right-handed 310
Helix 109	AM1	I	820	839	Right-handed alpha
Helix 110	AM2	I	840	850	Right-handed alpha
Helix 111	AM3	I	854	858	Right-handed 310
Helix 112	AM4	I	873	878	Right-handed alpha
Helix 113	AM5	L	21	29	Right-handed alpha
Helix 114	AM6	L	29	62	Right-handed alpha
Helix 115	AM7	L	63	67	Right-handed 310
Helix 116	AM8	L	70	76	Right-handed alpha
Helix 117	AM9	L	77	82	Right-handed alpha
Helix 118	AN1	L	111	128	Right-handed alpha
Helix 119	AN2	L	133	150	Right-handed alpha
Helix 120	AN3	L	207	224	Right-handed alpha
Helix 121	AN4	L	247	263	Right-handed alpha
Helix 122	AN5	L	301	307	Right-handed alpha
Helix 123	AN6	L	313	325	Right-handed alpha
Helix 124	AN7	L	331	342	Right-handed alpha
Helix 125	AN8	L	375	408	Right-handed alpha
Helix 126	AN9	L	437	443	Right-handed alpha
Helix 127	AO1	L	452	468	Right-handed alpha
Helix 128	AO2	L	474	485	Right-handed alpha
Helix 129	AO3	L	485	495	Right-handed alpha
Helix 130	AO4	L	507	523	Right-handed alpha
Helix 131	AO5	L	540	551	Right-handed alpha
Helix 132	AO6	L	552	558	Right-handed alpha
Helix 133	AO7	L	569	588	Right-handed alpha
Helix 134	AO8	L	628	636	Right-handed alpha
Helix 135	AO9	L	637	640	Right-handed 310
Helix 136	AP1	L	642	654	Right-handed alpha
Helix 137	AP2	L	654	661	Right-handed alpha
Helix 138	AP3	L	676	689	Right-handed alpha
Helix 139	AP4	L	689	707	Right-handed alpha
Helix 140	AP5	L	770	777	Right-handed alpha
Helix 141	AP6	L	777	801	Right-handed alpha
Helix 142	AP7	L	817	819	Right-handed 310
Helix 143	AP8	L	820	831	Right-handed alpha
Helix 144	AP9	L	831	839	Right-handed alpha
Helix 145	AQ1	L	840	850	Right-handed alpha
Helix 146	AQ2	L	851	853	Right-handed 310
Helix 147	AQ3	L	854	855	Right-handed 310
Helix 148	AQ4	L	856	861	Right-handed alpha
Helix 149	AQ5	L	871	878	Right-handed 310

There are 33 sheets in PDB entry 8DH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	241	246	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	418	421	parallel
Strand 3	B	426	428	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	444	446	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	529	530	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	813	816	anti-parallel
Strand 3	B	808	810	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	598	first strand
Strand 2	B	605	610	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	711	first strand
Strand 2	B	718	720	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	734	737	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	741	first strand
Strand 2	B	768	769	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	746	first strand
Strand 2	B	754	755	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	E	418	421	parallel
Strand 3	E	426	428	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	444	446	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	450	451	first strand
Strand 2	E	529	530	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	537	first strand
Strand 2	E	813	815	anti-parallel
Strand 3	E	808	810	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	598	first strand
Strand 2	E	605	610	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	711	first strand
Strand 2	E	718	720	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	725	728	first strand
Strand 2	E	734	737	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	740	742	first strand
Strand 2	E	767	769	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	229	first strand
Strand 2	I	244	246	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	297	298	first strand
Strand 2	I	418	421	parallel
Strand 3	I	426	428	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	328	330	first strand
Strand 2	I	444	446	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	450	451	first strand
Strand 2	I	529	530	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	536	537	first strand
Strand 2	I	813	815	anti-parallel
Strand 3	I	808	810	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	593	598	first strand
Strand 2	I	605	610	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	725	728	first strand
Strand 2	I	734	737	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	740	742	first strand
Strand 2	I	767	769	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	328	330	first strand
Strand 2	L	444	446	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	418	420	first strand
Strand 2	L	426	428	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	450	451	first strand
Strand 2	L	529	530	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	710	712	first strand
Strand 2	L	717	720	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	725	728	first strand
Strand 2	L	734	737	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	740	742	first strand
Strand 2	L	767	769	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	808	810	first strand
Strand 2	L	813	815	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH1