Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH3 entry

There are 6 chains in PDB entry 8DH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 883
A	G 3	A 9
A	A 11	C 18
C	U 0	U 8
D	T 2	C 8
E	ILE 4	TYR 385

There are137 helices in PDB entry 8DH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	17	Right-handed alpha
Helix 2	AA2	B	17	29	Right-handed alpha
Helix 3	AA3	B	29	61	Right-handed alpha
Helix 4	AA4	B	70	95	Right-handed alpha
Helix 5	AA5	B	100	109	Right-handed alpha
Helix 6	AA6	B	110	128	Right-handed alpha
Helix 7	AA7	B	133	157	Right-handed alpha
Helix 8	AA8	B	162	173	Right-handed alpha
Helix 9	AA9	B	175	194	Right-handed alpha
Helix 10	AB1	B	205	224	Right-handed alpha
Helix 11	AB2	B	247	265	Right-handed alpha
Helix 12	AB3	B	301	307	Right-handed alpha
Helix 13	AB4	B	313	326	Right-handed alpha
Helix 14	AB5	B	331	345	Right-handed alpha
Helix 15	AB6	B	373	408	Right-handed alpha
Helix 16	AB7	B	437	443	Right-handed alpha
Helix 17	AB8	B	452	468	Right-handed alpha
Helix 18	AB9	B	474	485	Right-handed alpha
Helix 19	AC1	B	485	495	Right-handed alpha
Helix 20	AC2	B	507	525	Right-handed alpha
Helix 21	AC3	B	540	551	Right-handed alpha
Helix 22	AC4	B	552	559	Right-handed alpha
Helix 23	AC5	B	569	589	Right-handed alpha
Helix 24	AC6	B	612	624	Right-handed alpha
Helix 25	AC7	B	626	636	Right-handed alpha
Helix 26	AC8	B	642	654	Right-handed alpha
Helix 27	AC9	B	654	662	Right-handed alpha
Helix 28	AD1	B	669	689	Right-handed alpha
Helix 29	AD2	B	689	708	Right-handed alpha
Helix 30	AD3	B	770	801	Right-handed alpha
Helix 31	AD4	B	817	819	Right-handed 310
Helix 32	AD5	B	820	839	Right-handed alpha
Helix 33	AD6	B	840	850	Right-handed alpha
Helix 34	AD7	B	871	882	Right-handed 310
Helix 35	AD8	E	8	17	Right-handed alpha
Helix 36	AD9	E	17	29	Right-handed alpha
Helix 37	AE1	E	29	61	Right-handed alpha
Helix 38	AE2	E	70	90	Right-handed alpha
Helix 39	AE3	E	101	109	Right-handed alpha
Helix 40	AE4	E	110	130	Right-handed alpha
Helix 41	AE5	E	133	153	Right-handed alpha
Helix 42	AE6	E	159	173	Right-handed alpha
Helix 43	AE7	E	174	191	Right-handed alpha
Helix 44	AE8	E	205	224	Right-handed alpha
Helix 45	AE9	E	247	265	Right-handed alpha
Helix 46	AF1	E	301	311	Right-handed alpha
Helix 47	AF2	E	313	326	Right-handed alpha
Helix 48	AF3	E	331	345	Right-handed alpha
Helix 49	AF4	E	373	408	Right-handed alpha
Helix 50	AF5	E	437	443	Right-handed alpha
Helix 51	AF6	E	452	468	Right-handed alpha
Helix 52	AF7	E	474	485	Right-handed alpha
Helix 53	AF8	E	485	495	Right-handed alpha
Helix 54	AF9	E	500	505	Right-handed alpha
Helix 55	AG1	E	507	525	Right-handed alpha
Helix 56	AG2	E	540	550	Right-handed alpha
Helix 57	AG3	E	552	559	Right-handed alpha
Helix 58	AG4	E	569	588	Right-handed alpha
Helix 59	AG5	E	612	624	Right-handed alpha
Helix 60	AG6	E	626	636	Right-handed alpha
Helix 61	AG7	E	637	640	Right-handed 310
Helix 62	AG8	E	642	654	Right-handed alpha
Helix 63	AG9	E	654	662	Right-handed alpha
Helix 64	AH1	E	669	689	Right-handed alpha
Helix 65	AH2	E	689	708	Right-handed alpha
Helix 66	AH3	E	770	801	Right-handed alpha
Helix 67	AH4	E	820	839	Right-handed alpha
Helix 68	AH5	E	840	850	Right-handed alpha
Helix 69	AH6	E	854	859	Right-handed alpha
Helix 70	AH7	E	871	878	Right-handed 310
Helix 71	AH8	I	9	15	Right-handed alpha
Helix 72	AH9	I	17	29	Right-handed alpha
Helix 73	AI1	I	29	61	Right-handed alpha
Helix 74	AI2	I	70	95	Right-handed alpha
Helix 75	AI3	I	100	106	Right-handed alpha
Helix 76	AI4	I	110	130	Right-handed alpha
Helix 77	AI5	I	133	157	Right-handed alpha
Helix 78	AI6	I	160	173	Right-handed alpha
Helix 79	AI7	I	175	194	Right-handed alpha
Helix 80	AI8	I	205	224	Right-handed alpha
Helix 81	AI9	I	247	264	Right-handed alpha
Helix 82	AJ1	I	301	308	Right-handed alpha
Helix 83	AJ2	I	313	325	Right-handed alpha
Helix 84	AJ3	I	331	343	Right-handed alpha
Helix 85	AJ4	I	378	408	Right-handed alpha
Helix 86	AJ5	I	437	443	Right-handed alpha
Helix 87	AJ6	I	452	469	Right-handed alpha
Helix 88	AJ7	I	474	485	Right-handed alpha
Helix 89	AJ8	I	485	495	Right-handed alpha
Helix 90	AJ9	I	507	525	Right-handed alpha
Helix 91	AK1	I	540	550	Right-handed alpha
Helix 92	AK2	I	552	559	Right-handed alpha
Helix 93	AK3	I	569	588	Right-handed alpha
Helix 94	AK4	I	612	624	Right-handed alpha
Helix 95	AK5	I	630	639	Right-handed alpha
Helix 96	AK6	I	642	654	Right-handed alpha
Helix 97	AK7	I	654	662	Right-handed alpha
Helix 98	AK8	I	669	689	Right-handed alpha
Helix 99	AK9	I	689	708	Right-handed alpha
Helix 100	AL1	I	770	802	Right-handed alpha
Helix 101	AL2	I	817	839	Right-handed alpha
Helix 102	AL3	I	840	851	Right-handed alpha
Helix 103	AL4	I	854	861	Right-handed alpha
Helix 104	AL5	I	871	878	Right-handed 310
Helix 105	AL6	M	6	17	Right-handed alpha
Helix 106	AL7	M	17	62	Right-handed alpha
Helix 107	AL8	M	70	95	Right-handed alpha
Helix 108	AL9	M	116	129	Right-handed alpha
Helix 109	AM1	M	133	157	Right-handed alpha
Helix 110	AM2	M	159	172	Right-handed alpha
Helix 111	AM3	M	175	183	Right-handed alpha
Helix 112	AM4	M	205	222	Right-handed alpha
Helix 113	AM5	M	247	265	Right-handed alpha
Helix 114	AM6	M	301	308	Right-handed alpha
Helix 115	AM7	M	313	326	Right-handed alpha
Helix 116	AM8	M	331	345	Right-handed alpha
Helix 117	AM9	M	373	409	Right-handed alpha
Helix 118	AN1	M	437	443	Right-handed alpha
Helix 119	AN2	M	452	468	Right-handed alpha
Helix 120	AN3	M	469	473	Right-handed 310
Helix 121	AN4	M	474	485	Right-handed alpha
Helix 122	AN5	M	485	495	Right-handed alpha
Helix 123	AN6	M	500	505	Right-handed alpha
Helix 124	AN7	M	507	524	Right-handed alpha
Helix 125	AN8	M	540	551	Right-handed alpha
Helix 126	AN9	M	552	559	Right-handed alpha
Helix 127	AO1	M	569	588	Right-handed alpha
Helix 128	AO2	M	612	624	Right-handed alpha
Helix 129	AO3	M	627	638	Right-handed alpha
Helix 130	AO4	M	642	654	Right-handed alpha
Helix 131	AO5	M	654	662	Right-handed alpha
Helix 132	AO6	M	669	689	Right-handed alpha
Helix 133	AO7	M	689	708	Right-handed alpha
Helix 134	AO8	M	770	802	Right-handed alpha
Helix 135	AO9	M	817	839	Right-handed alpha
Helix 136	AP1	M	840	850	Right-handed alpha
Helix 137	AP2	M	871	878	Right-handed alpha

There are 32 sheets in PDB entry 8DH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	241	246	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	418	421	parallel
Strand 3	B	426	428	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	444	446	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	529	530	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	813	816	anti-parallel
Strand 3	B	808	810	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	598	first strand
Strand 2	B	605	610	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	711	first strand
Strand 2	B	718	720	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	734	737	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	E	244	246	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	444	446	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	420	first strand
Strand 2	E	426	428	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	450	451	first strand
Strand 2	E	529	530	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	534	537	first strand
Strand 2	E	813	816	anti-parallel
Strand 3	E	808	809	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	598	first strand
Strand 2	E	605	610	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	711	first strand
Strand 2	E	718	720	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	725	728	first strand
Strand 2	E	734	737	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	740	742	first strand
Strand 2	E	767	769	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	745	746	first strand
Strand 2	E	754	755	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	232	first strand
Strand 2	I	241	246	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	297	298	first strand
Strand 2	I	418	421	parallel
Strand 3	I	426	428	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	414	415	first strand
Strand 2	I	327	330	anti-parallel
Strand 3	I	444	446	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	450	451	first strand
Strand 2	I	529	530	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	534	537	first strand
Strand 2	I	813	816	anti-parallel
Strand 3	I	808	809	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	710	711	first strand
Strand 2	I	718	720	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	725	728	first strand
Strand 2	I	734	737	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	740	742	first strand
Strand 2	I	767	769	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	297	298	first strand
Strand 2	M	418	421	parallel
Strand 3	M	426	428	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	414	415	first strand
Strand 2	M	327	330	anti-parallel
Strand 3	M	444	446	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	450	451	first strand
Strand 2	M	529	530	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	710	712	first strand
Strand 2	M	717	720	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	725	728	first strand
Strand 2	M	734	737	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	808	810	first strand
Strand 2	M	813	815	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH3