Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH4 entry

There are 6 chains in PDB entry 8DH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 883
A	A 4	A 9
A	A 11	C 18
C	U 0	U 8
D	T 2	T 7
E	ILE 4	ARG 395

There are148 helices in PDB entry 8DH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	17	Right-handed alpha
Helix 2	AA2	B	17	29	Right-handed alpha
Helix 3	AA3	B	29	62	Right-handed alpha
Helix 4	AA4	B	63	67	Right-handed 310
Helix 5	AA5	B	70	95	Right-handed alpha
Helix 6	AA6	B	100	107	Right-handed alpha
Helix 7	AA7	B	110	128	Right-handed alpha
Helix 8	AA8	B	133	157	Right-handed alpha
Helix 9	AA9	B	159	173	Right-handed alpha
Helix 10	AB1	B	175	193	Right-handed alpha
Helix 11	AB2	B	205	224	Right-handed alpha
Helix 12	AB3	B	247	263	Right-handed alpha
Helix 13	AB4	B	301	307	Right-handed alpha
Helix 14	AB5	B	313	325	Right-handed alpha
Helix 15	AB6	B	331	345	Right-handed alpha
Helix 16	AB7	B	373	408	Right-handed alpha
Helix 17	AB8	B	437	443	Right-handed alpha
Helix 18	AB9	B	452	468	Right-handed alpha
Helix 19	AC1	B	474	485	Right-handed alpha
Helix 20	AC2	B	485	495	Right-handed alpha
Helix 21	AC3	B	501	505	Right-handed 310
Helix 22	AC4	B	507	525	Right-handed alpha
Helix 23	AC5	B	540	551	Right-handed alpha
Helix 24	AC6	B	552	559	Right-handed alpha
Helix 25	AC7	B	569	589	Right-handed alpha
Helix 26	AC8	B	612	624	Right-handed alpha
Helix 27	AC9	B	626	636	Right-handed alpha
Helix 28	AD1	B	637	640	Right-handed 310
Helix 29	AD2	B	642	654	Right-handed alpha
Helix 30	AD3	B	654	661	Right-handed alpha
Helix 31	AD4	B	669	689	Right-handed alpha
Helix 32	AD5	B	689	708	Right-handed alpha
Helix 33	AD6	B	770	801	Right-handed alpha
Helix 34	AD7	B	817	819	Right-handed 310
Helix 35	AD8	B	820	839	Right-handed alpha
Helix 36	AD9	B	840	850	Right-handed alpha
Helix 37	AE1	B	854	859	Right-handed alpha
Helix 38	AE2	B	871	878	Right-handed 310
Helix 39	AE3	E	7	17	Right-handed alpha
Helix 40	AE4	E	17	29	Right-handed alpha
Helix 41	AE5	E	29	62	Right-handed alpha
Helix 42	AE6	E	63	67	Right-handed 310
Helix 43	AE7	E	70	92	Right-handed alpha
Helix 44	AE8	E	103	109	Right-handed alpha
Helix 45	AE9	E	110	129	Right-handed alpha
Helix 46	AF1	E	133	157	Right-handed alpha
Helix 47	AF2	E	159	173	Right-handed alpha
Helix 48	AF3	E	175	194	Right-handed alpha
Helix 49	AF4	E	205	224	Right-handed alpha
Helix 50	AF5	E	247	264	Right-handed alpha
Helix 51	AF6	E	301	307	Right-handed alpha
Helix 52	AF7	E	313	326	Right-handed alpha
Helix 53	AF8	E	331	345	Right-handed alpha
Helix 54	AF9	E	377	408	Right-handed alpha
Helix 55	AG1	E	437	443	Right-handed alpha
Helix 56	AG2	E	452	469	Right-handed alpha
Helix 57	AG3	E	474	485	Right-handed alpha
Helix 58	AG4	E	485	495	Right-handed alpha
Helix 59	AG5	E	507	525	Right-handed alpha
Helix 60	AG6	E	540	551	Right-handed alpha
Helix 61	AG7	E	552	559	Right-handed alpha
Helix 62	AG8	E	569	588	Right-handed alpha
Helix 63	AG9	E	612	624	Right-handed alpha
Helix 64	AH1	E	626	638	Right-handed alpha
Helix 65	AH2	E	642	654	Right-handed alpha
Helix 66	AH3	E	654	661	Right-handed alpha
Helix 67	AH4	E	669	689	Right-handed alpha
Helix 68	AH5	E	689	708	Right-handed alpha
Helix 69	AH6	E	770	801	Right-handed alpha
Helix 70	AH7	E	817	819	Right-handed 310
Helix 71	AH8	E	820	839	Right-handed alpha
Helix 72	AH9	E	840	850	Right-handed alpha
Helix 73	AI1	E	871	878	Right-handed 310
Helix 74	AI2	I	9	14	Right-handed alpha
Helix 75	AI3	I	17	29	Right-handed alpha
Helix 76	AI4	I	29	62	Right-handed alpha
Helix 77	AI5	I	63	67	Right-handed 310
Helix 78	AI6	I	70	95	Right-handed alpha
Helix 79	AI7	I	100	107	Right-handed alpha
Helix 80	AI8	I	110	129	Right-handed alpha
Helix 81	AI9	I	133	151	Right-handed alpha
Helix 82	AJ1	I	151	157	Right-handed alpha
Helix 83	AJ2	I	159	173	Right-handed alpha
Helix 84	AJ3	I	175	194	Right-handed alpha
Helix 85	AJ4	I	205	224	Right-handed alpha
Helix 86	AJ5	I	247	264	Right-handed alpha
Helix 87	AJ6	I	301	307	Right-handed alpha
Helix 88	AJ7	I	313	325	Right-handed alpha
Helix 89	AJ8	I	331	343	Right-handed alpha
Helix 90	AJ9	I	376	408	Right-handed alpha
Helix 91	AK1	I	437	443	Right-handed alpha
Helix 92	AK2	I	452	468	Right-handed alpha
Helix 93	AK3	I	474	485	Right-handed alpha
Helix 94	AK4	I	485	495	Right-handed alpha
Helix 95	AK5	I	507	525	Right-handed alpha
Helix 96	AK6	I	540	550	Right-handed alpha
Helix 97	AK7	I	552	559	Right-handed alpha
Helix 98	AK8	I	569	588	Right-handed alpha
Helix 99	AK9	I	612	624	Right-handed alpha
Helix 100	AL1	I	630	636	Right-handed alpha
Helix 101	AL2	I	642	654	Right-handed alpha
Helix 102	AL3	I	654	661	Right-handed alpha
Helix 103	AL4	I	669	689	Right-handed alpha
Helix 104	AL5	I	689	708	Right-handed alpha
Helix 105	AL6	I	770	802	Right-handed alpha
Helix 106	AL7	I	817	819	Right-handed 310
Helix 107	AL8	I	820	839	Right-handed alpha
Helix 108	AL9	I	840	850	Right-handed alpha
Helix 109	AM1	I	854	859	Right-handed alpha
Helix 110	AM2	I	872	878	Right-handed alpha
Helix 111	AM3	M	7	17	Right-handed alpha
Helix 112	AM4	M	17	29	Right-handed alpha
Helix 113	AM5	M	29	62	Right-handed alpha
Helix 114	AM6	M	63	66	Right-handed 310
Helix 115	AM7	M	70	95	Right-handed alpha
Helix 116	AM8	M	100	107	Right-handed alpha
Helix 117	AM9	M	110	129	Right-handed alpha
Helix 118	AN1	M	133	158	Right-handed alpha
Helix 119	AN2	M	159	173	Right-handed alpha
Helix 120	AN3	M	175	185	Right-handed alpha
Helix 121	AN4	M	206	224	Right-handed alpha
Helix 122	AN5	M	247	265	Right-handed alpha
Helix 123	AN6	M	301	307	Right-handed alpha
Helix 124	AN7	M	308	310	Right-handed 310
Helix 125	AN8	M	313	326	Right-handed alpha
Helix 126	AN9	M	331	345	Right-handed alpha
Helix 127	AO1	M	373	409	Right-handed alpha
Helix 128	AO2	M	437	443	Right-handed alpha
Helix 129	AO3	M	452	469	Right-handed alpha
Helix 130	AO4	M	474	485	Right-handed alpha
Helix 131	AO5	M	485	495	Right-handed alpha
Helix 132	AO6	M	496	499	Right-handed 310
Helix 133	AO7	M	500	505	Right-handed alpha
Helix 134	AO8	M	507	525	Right-handed alpha
Helix 135	AO9	M	540	551	Right-handed alpha
Helix 136	AP1	M	552	559	Right-handed alpha
Helix 137	AP2	M	569	588	Right-handed alpha
Helix 138	AP3	M	612	624	Right-handed alpha
Helix 139	AP4	M	627	638	Right-handed alpha
Helix 140	AP5	M	642	654	Right-handed alpha
Helix 141	AP6	M	654	662	Right-handed alpha
Helix 142	AP7	M	669	689	Right-handed alpha
Helix 143	AP8	M	689	708	Right-handed alpha
Helix 144	AP9	M	771	801	Right-handed alpha
Helix 145	AQ1	M	820	839	Right-handed alpha
Helix 146	AQ2	M	840	850	Right-handed alpha
Helix 147	AQ3	M	856	861	Right-handed alpha
Helix 148	AQ4	M	871	875	Right-handed 310

There are 30 sheets in PDB entry 8DH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	418	421	parallel
Strand 3	B	426	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	444	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	529	530	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	813	816	anti-parallel
Strand 3	B	808	810	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	598	first strand
Strand 2	B	605	610	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	711	first strand
Strand 2	B	718	720	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	734	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	444	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	420	first strand
Strand 2	E	426	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	450	451	first strand
Strand 2	E	529	530	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	537	first strand
Strand 2	E	813	815	anti-parallel
Strand 3	E	808	809	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	598	first strand
Strand 2	E	605	610	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	711	first strand
Strand 2	E	718	720	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	725	728	first strand
Strand 2	E	734	737	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	754	754	first strand
Strand 2	E	740	746	anti-parallel
Strand 3	E	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	297	298	first strand
Strand 2	I	418	421	parallel
Strand 3	I	426	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	328	330	first strand
Strand 2	I	444	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	450	451	first strand
Strand 2	I	529	530	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	534	537	first strand
Strand 2	I	813	816	anti-parallel
Strand 3	I	808	809	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	725	728	first strand
Strand 2	I	734	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	740	742	first strand
Strand 2	I	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	227	232	first strand
Strand 2	M	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	297	298	first strand
Strand 2	M	418	421	parallel
Strand 3	M	426	428	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	328	330	first strand
Strand 2	M	444	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	450	451	first strand
Strand 2	M	529	530	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	534	537	first strand
Strand 2	M	813	816	anti-parallel
Strand 3	M	808	809	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	710	711	first strand
Strand 2	M	718	720	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	725	728	first strand
Strand 2	M	734	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	740	742	first strand
Strand 2	M	767	769	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH4