Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DH6 entry

There are 9 chains in PDB entry 8DH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 MET 1SER 534
b
 ASP 16GLN 251
c
 MET 1VAL 269
d
 PRO 29PRO 149
e
 ALA 21LYS 153
f
 ASP 45SER 146
g
 ALA 2ALA 60
h
 VAL 28PHE 78
i
 THR 2LYS 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8DH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
1 6Right-handed alpha
Helix 2
AA2
a
10 40Right-handed alpha
Helix 3
AA3
a
51 70Right-handed alpha
Helix 4
AA4
a
70 76Right-handed alpha
Helix 5
AA5
a
77 88Right-handed alpha
Helix 6
AA6
a
95 119Right-handed alpha
Helix 7
AA7
a
142 172Right-handed alpha
Helix 8
AA8
a
178 182Right-handed 310
Helix 9
AA9
a
183 216Right-handed alpha
Helix 10
AB1
a
228 263Right-handed alpha
Helix 11
AB2
a
269 285Right-handed alpha
Helix 12
AB3
a
286 292Right-handed 310
Helix 13
AB4
a
298 312Right-handed alpha
Helix 14
AB5
a
312 328Right-handed alpha
Helix 15
AB6
a
335 359Right-handed alpha
Helix 16
AB7
a
362 368Right-handed alpha
Helix 17
AB8
a
370 402Right-handed alpha
Helix 18
AB9
a
406 426Right-handed alpha
Helix 19
AC1
a
426 435Right-handed alpha
Helix 20
AC2
a
447 485Right-handed alpha
Helix 21
AC3
a
500 506Right-handed alpha
Helix 22
AC4
a
513 518Right-handed 310
Helix 23
AC5
b
30 66Right-handed alpha
Helix 24
AC6
b
78 108Right-handed alpha
Helix 25
AC7
b
149 153Right-handed 310
Helix 26
AC8
b
226 230Right-handed 310
Helix 27
AC9
b
240 251Right-handed alpha
Helix 28
AD1
c
2 7Right-handed alpha
Helix 29
AD2
c
21 41Right-handed alpha
Helix 30
AD3
c
48 75Right-handed alpha
Helix 31
AD4
c
80 115Right-handed alpha
Helix 32
AD5
c
117 121Right-handed 310
Helix 33
AD6
c
136 162Right-handed alpha
Helix 34
AD7
c
163 191Right-handed alpha
Helix 35
AD8
c
198 232Right-handed alpha
Helix 36
AD9
c
241 266Right-handed alpha
Helix 37
AE1
d
42 46Right-handed 310
Helix 38
AE2
d
58 63Right-handed alpha
Helix 39
AE3
d
64 77Right-handed alpha
Helix 40
AE4
e
27 32Right-handed alpha
Helix 41
AE5
e
33 38Right-handed alpha
Helix 42
AE6
e
42 58Right-handed alpha
Helix 43
AE7
e
60 64Right-handed 310
Helix 44
AE8
e
65 78Right-handed alpha
Helix 45
AE9
e
80 84Right-handed 310
Helix 46
AF1
e
90 116Right-handed alpha
Helix 47
AF2
e
125 139Right-handed alpha
Helix 48
AF3
f
48 62Right-handed alpha
Helix 49
AF4
f
65 78Right-handed alpha
Helix 50
AF5
f
84 98Right-handed alpha
Helix 51
AF6
f
100 115Right-handed alpha
Helix 52
AF7
f
117 128Right-handed alpha
Helix 53
AF8
f
128 136Right-handed alpha
Helix 54
AF9
f
139 144Right-handed alpha
Helix 55
AG1
g
4 14Right-handed alpha
Helix 56
AG2
g
18 22Right-handed 310
Helix 57
AG3
g
26 47Right-handed alpha
Helix 58
AG4
g
47 54Right-handed alpha
Helix 59
AG5
h
48 74Right-handed alpha
Helix 60
AG6
i
8 56Right-handed alpha
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There are 4 sheets in PDB entry 8DH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
532 533first strand
Strand 2
d
109 111parallel
Strand 3
d
122 124anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
141 145first strand
Strand 2
b
125 130anti-parallel
Strand 3
b
115 122anti-parallel
Strand 4
b
174 181parallel
Strand 5
b
205 210anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
167 170first strand
Strand 2
b
233 239parallel
Strand 3
b
215 221anti-parallel
Strand 4
b
188 190anti-parallel
Strand 5
b
195 197anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
98 102first strand
Strand 2
d
140 145parallel
Strand 3
d
132 133anti-parallel
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