Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH7 entry

There are 2 chains in PDB entry 8DH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASP 526
A	MET 1	ASP 526

There are 38 helices in PDB entry 8DH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	11	Right-handed alpha
Helix 2	AA2	B	13	20	Right-handed 310
Helix 3	AA3	B	22	30	Right-handed 310
Helix 4	AA4	B	48	62	Right-handed alpha
Helix 5	AA5	B	78	87	Right-handed alpha
Helix 6	AA6	B	99	108	Right-handed alpha
Helix 7	AA7	B	120	127	Right-handed alpha
Helix 8	AA8	B	164	171	Right-handed alpha
Helix 9	AA9	B	246	264	Right-handed alpha
Helix 10	AB1	B	279	291	Right-handed alpha
Helix 11	AB2	B	305	315	Right-handed alpha
Helix 12	AB3	B	328	337	Right-handed alpha
Helix 13	AB4	B	338	344	Right-handed alpha
Helix 14	AB5	B	350	355	Right-handed alpha
Helix 15	AB6	B	356	364	Right-handed alpha
Helix 16	AB7	B	396	404	Right-handed alpha
Helix 17	AB8	B	457	469	Right-handed alpha
Helix 18	AB9	B	471	493	Right-handed alpha
Helix 19	AC1	B	505	515	Right-handed alpha
Helix 20	AC2	A	4	11	Right-handed alpha
Helix 21	AC3	A	13	20	Right-handed 310
Helix 22	AC4	A	22	30	Right-handed 310
Helix 23	AC5	A	48	62	Right-handed alpha
Helix 24	AC6	A	78	87	Right-handed alpha
Helix 25	AC7	A	99	108	Right-handed alpha
Helix 26	AC8	A	120	127	Right-handed alpha
Helix 27	AC9	A	164	171	Right-handed alpha
Helix 28	AD1	A	246	264	Right-handed alpha
Helix 29	AD2	A	279	291	Right-handed alpha
Helix 30	AD3	A	306	315	Right-handed alpha
Helix 31	AD4	A	328	338	Right-handed alpha
Helix 32	AD5	A	338	344	Right-handed alpha
Helix 33	AD6	A	350	355	Right-handed alpha
Helix 34	AD7	A	356	364	Right-handed alpha
Helix 35	AD8	A	396	404	Right-handed alpha
Helix 36	AD9	A	457	469	Right-handed alpha
Helix 37	AE1	A	471	493	Right-handed alpha
Helix 38	AE2	A	505	515	Right-handed alpha

There are 16 sheets in PDB entry 8DH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	90	94	parallel
Strand 3	B	69	73	parallel
Strand 4	B	35	38	parallel
Strand 5	B	140	147	parallel
Strand 6	B	172	180	parallel
Strand 7	B	225	231	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	156	157	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	346	349	parallel
Strand 3	B	317	322	parallel
Strand 4	B	297	300	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	366	369	parallel
Strand 3	B	406	410	parallel
Strand 4	B	443	445	parallel
Strand 5	B	450	452	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	324	325	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	373	375	anti-parallel
Strand 3	B	427	428	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	389	390	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	415	first strand
Strand 2	B	424	425	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	90	94	parallel
Strand 3	A	69	73	parallel
Strand 4	A	35	38	parallel
Strand 5	A	140	147	parallel
Strand 6	A	172	180	parallel
Strand 7	A	225	231	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	156	157	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	346	349	parallel
Strand 3	A	317	322	parallel
Strand 4	A	297	300	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	366	369	parallel
Strand 3	A	406	410	parallel
Strand 4	A	443	445	parallel
Strand 5	A	450	452	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	324	325	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	373	375	anti-parallel
Strand 3	A	427	428	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	389	390	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	424	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH7