Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH8 entry

There are 3 chains in PDB entry 8DH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 125	ASN 824
B	VAL 125	ASN 824
C	VAL 1	ASP 141

There are 19 helices in PDB entry 8DH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	200	204	Right-handed 310
Helix 2	AA2	A	229	233	Right-handed 310
Helix 3	AA3	A	360	362	Right-handed 310
Helix 4	AA4	A	375	377	Right-handed 310
Helix 5	AA5	A	528	533	Right-handed 310
Helix 6	AA6	A	561	564	Right-handed 310
Helix 7	AA7	A	666	671	Right-handed alpha
Helix 8	AA8	A	732	735	Right-handed 310
Helix 9	AA9	B	200	204	Right-handed 310
Helix 10	AB1	B	360	362	Right-handed 310
Helix 11	AB2	B	375	377	Right-handed 310
Helix 12	AB3	B	528	533	Right-handed 310
Helix 13	AB4	B	561	564	Right-handed 310
Helix 14	AB5	B	732	736	Right-handed 310
Helix 15	AB6	C	2	25	Right-handed alpha
Helix 16	AB7	C	26	29	Right-handed 310
Helix 17	AB8	C	50	67	Right-handed alpha
Helix 18	AB9	C	71	94	Right-handed alpha
Helix 19	AC1	C	108	140	Right-handed alpha

There are 37 sheets in PDB entry 8DH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	133	first strand
Strand 2	A	139	147	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	187	188	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	158	164	anti-parallel
Strand 3	A	208	216	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	158	164	anti-parallel
Strand 3	A	208	216	anti-parallel
Strand 4	A	226	228	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	252	255	anti-parallel
Strand 3	A	290	293	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	286	first strand
Strand 2	A	266	275	anti-parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	324	325	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	346	354	anti-parallel
Strand 3	A	357	359	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	346	354	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	379	383	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	421	426	parallel
Strand 3	A	406	412	anti-parallel
Strand 4	A	364	368	anti-parallel
Strand 5	A	372	373	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	421	426	parallel
Strand 3	A	406	412	anti-parallel
Strand 4	A	415	416	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	443	447	anti-parallel
Strand 3	A	494	498	anti-parallel
Strand 4	A	487	488	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	459	467	anti-parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	518	521	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	459	467	anti-parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	525	527	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	545	first strand
Strand 2	A	551	557	anti-parallel
Strand 3	A	593	597	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	586	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	605	613	anti-parallel
Strand 4	A	627	628	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	648	first strand
Strand 2	A	656	662	anti-parallel
Strand 3	A	698	703	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	694	first strand
Strand 2	A	676	683	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	727	730	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	748	first strand
Strand 2	A	751	758	anti-parallel
Strand 3	A	792	795	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	767	774	anti-parallel
Strand 3	A	805	811	anti-parallel
Strand 4	A	821	823	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	133	first strand
Strand 2	B	139	147	anti-parallel
Strand 3	B	193	198	anti-parallel
Strand 4	B	187	188	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	158	164	anti-parallel
Strand 3	B	208	216	anti-parallel
Strand 4	B	219	222	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	158	164	anti-parallel
Strand 3	B	208	216	anti-parallel
Strand 4	B	226	228	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	246	first strand
Strand 2	B	252	257	anti-parallel
Strand 3	B	290	293	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	286	first strand
Strand 2	B	266	275	anti-parallel
Strand 3	B	301	310	anti-parallel
Strand 4	B	324	327	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	346	354	anti-parallel
Strand 3	B	357	358	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	346	354	anti-parallel
Strand 3	B	387	391	anti-parallel
Strand 4	B	379	381	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	421	426	parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	364	368	anti-parallel
Strand 5	B	372	373	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	421	426	parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	415	416	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	436	first strand
Strand 2	B	443	447	anti-parallel
Strand 3	B	494	498	anti-parallel
Strand 4	B	487	488	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	483	first strand
Strand 2	B	459	467	anti-parallel
Strand 3	B	511	515	anti-parallel
Strand 4	B	518	521	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	483	first strand
Strand 2	B	459	467	anti-parallel
Strand 3	B	506	509	anti-parallel
Strand 4	B	525	527	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	545	first strand
Strand 2	B	551	557	anti-parallel
Strand 3	B	593	597	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	586	first strand
Strand 2	B	566	574	anti-parallel
Strand 3	B	605	613	anti-parallel
Strand 4	B	627	628	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	648	first strand
Strand 2	B	656	662	anti-parallel
Strand 3	B	698	703	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	694	first strand
Strand 2	B	676	683	anti-parallel
Strand 3	B	707	716	anti-parallel
Strand 4	B	719	720	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	694	first strand
Strand 2	B	676	683	anti-parallel
Strand 3	B	707	716	anti-parallel
Strand 4	B	726	730	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	739	748	first strand
Strand 2	B	751	758	anti-parallel
Strand 3	B	792	795	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	787	first strand
Strand 2	B	767	774	anti-parallel
Strand 3	B	805	812	anti-parallel
Strand 4	B	821	823	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH8