Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DH9 entry

There are 4 chains in PDB entry 8DH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 332	PHE 826
B	THR 328	PHE 826
C	VAL 1	ASP 141
D	VAL 22	CYS 167

There are 22 helices in PDB entry 8DH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	360	362	Right-handed 310
Helix 2	AA2	A	375	377	Right-handed 310
Helix 3	AA3	A	449	453	Right-handed 310
Helix 4	AA4	A	528	533	Right-handed 310
Helix 5	AA5	A	561	564	Right-handed 310
Helix 6	AA6	A	731	735	Right-handed alpha
Helix 7	AA7	B	360	362	Right-handed 310
Helix 8	AA8	B	375	377	Right-handed 310
Helix 9	AA9	B	451	455	Right-handed 310
Helix 10	AB1	B	528	532	Right-handed 310
Helix 11	AB2	B	732	736	Right-handed 310
Helix 12	AB3	C	2	26	Right-handed alpha
Helix 13	AB4	C	27	29	Right-handed 310
Helix 14	AB5	C	50	67	Right-handed alpha
Helix 15	AB6	C	70	94	Right-handed alpha
Helix 16	AB7	C	107	117	Right-handed alpha
Helix 17	AB8	C	117	141	Right-handed alpha
Helix 18	AB9	D	23	49	Right-handed alpha
Helix 19	AC1	D	71	88	Right-handed alpha
Helix 20	AC2	D	91	115	Right-handed alpha
Helix 21	AC3	D	129	138	Right-handed alpha
Helix 22	AC4	D	138	163	Right-handed alpha

There are 26 sheets in PDB entry 8DH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	422	424	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	387	391	anti-parallel
Strand 3	A	379	381	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	357	358	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	408	412	anti-parallel
Strand 4	A	415	416	anti-parallel
Strand 5	C	35	36	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	443	447	anti-parallel
Strand 3	A	494	498	anti-parallel
Strand 4	A	487	488	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	459	467	anti-parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	518	521	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	459	467	anti-parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	525	527	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	545	first strand
Strand 2	A	551	557	anti-parallel
Strand 3	A	593	597	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	586	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	605	613	anti-parallel
Strand 4	A	627	628	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	648	first strand
Strand 2	A	656	662	anti-parallel
Strand 3	A	698	703	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	694	first strand
Strand 2	A	676	683	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	726	730	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	746	first strand
Strand 2	A	751	758	anti-parallel
Strand 3	A	792	796	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	787	first strand
Strand 2	A	767	774	anti-parallel
Strand 3	A	805	811	anti-parallel
Strand 4	A	821	824	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	346	354	anti-parallel
Strand 3	B	357	358	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	346	354	anti-parallel
Strand 3	B	387	391	anti-parallel
Strand 4	B	379	381	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	421	426	parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	364	368	anti-parallel
Strand 5	B	372	373	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	421	426	parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	415	416	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	436	first strand
Strand 2	B	443	447	anti-parallel
Strand 3	B	494	498	anti-parallel
Strand 4	B	487	488	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	484	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	507	515	anti-parallel
Strand 4	B	518	521	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	484	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	507	515	anti-parallel
Strand 4	B	525	527	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	545	first strand
Strand 2	B	552	557	anti-parallel
Strand 3	B	593	596	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	586	first strand
Strand 2	B	566	574	anti-parallel
Strand 3	B	605	613	anti-parallel
Strand 4	B	627	628	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	648	first strand
Strand 2	B	656	662	anti-parallel
Strand 3	B	698	703	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	694	first strand
Strand 2	B	676	683	anti-parallel
Strand 3	B	707	715	anti-parallel
Strand 4	B	726	730	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	748	first strand
Strand 2	B	751	755	anti-parallel
Strand 3	B	792	795	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	787	first strand
Strand 2	B	767	774	anti-parallel
Strand 3	B	805	812	anti-parallel
Strand 4	B	821	824	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DH9