Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DHA entry

There are 3 chains in PDB entry 8DHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 332VAL 425
B
 ASP 427LEU 630
C
 VAL 1ASP 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8DHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
375 377Right-handed 310
Helix 2
AA2
B
528 533Right-handed 310
Helix 3
AA3
C
2 26Right-handed alpha
Helix 4
AA4
C
50 67Right-handed alpha
Helix 5
AA5
C
70 94Right-handed alpha
Helix 6
AA6
C
107 117Right-handed alpha
Helix 7
AA7
C
117 141Right-handed alpha
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There are 9 sheets in PDB entry 8DHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
421 424parallel
Strand 3
A
406 412anti-parallel
Strand 4
A
365 368anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
421 424parallel
Strand 3
A
406 412anti-parallel
Strand 4
A
415 416anti-parallel
Strand 5
C
35 36parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
387 391anti-parallel
Strand 3
A
379 381anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
357 358anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 436first strand
Strand 2
B
443 447anti-parallel
Strand 3
B
494 498anti-parallel
Strand 4
B
487 488anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 483first strand
Strand 2
B
459 466anti-parallel
Strand 3
B
507 515anti-parallel
Strand 4
B
518 521anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 483first strand
Strand 2
B
459 466anti-parallel
Strand 3
B
507 515anti-parallel
Strand 4
B
525 527anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 545first strand
Strand 2
B
551 555anti-parallel
Strand 3
B
593 597anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 586first strand
Strand 2
B
566 573anti-parallel
Strand 3
B
606 613anti-parallel
Strand 4
B
627 628anti-parallel
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