Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DHB entry

There are 10 chains in PDB entry 8DHB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 61	VAL 369
B	MET 6	GLU 301
C	ASP 49	PHE 158
D	ALA 0	ALA 123
E	LYS 6	VAL 121
F	THR 6	PRO 96
G	GLY 81	MET 171
H	PRO 39	VAL 97
I	LEU 44	SER 1106
J	ASN 2	SER 558

There are 67 helices in PDB entry 8DHB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	84	Right-handed alpha
Helix 2	AA2	A	88	93	Right-handed 310
Helix 3	AA3	A	129	134	Right-handed alpha
Helix 4	AA4	A	150	168	Right-handed alpha
Helix 5	AA5	A	184	206	Right-handed alpha
Helix 6	AA6	A	223	237	Right-handed alpha
Helix 7	AA7	A	239	253	Right-handed alpha
Helix 8	AA8	A	278	299	Right-handed alpha
Helix 9	AA9	A	343	347	Right-handed alpha
Helix 10	AB1	A	348	369	Right-handed alpha
Helix 11	AB2	B	19	28	Right-handed alpha
Helix 12	AB3	B	70	77	Right-handed alpha
Helix 13	AB4	B	103	109	Right-handed alpha
Helix 14	AB5	B	136	152	Right-handed alpha
Helix 15	AB6	B	167	181	Right-handed alpha
Helix 16	AB7	B	183	199	Right-handed alpha
Helix 17	AB8	B	225	244	Right-handed alpha
Helix 18	AB9	B	282	298	Right-handed alpha
Helix 19	AC1	C	50	65	Right-handed alpha
Helix 20	AC2	C	84	92	Right-handed alpha
Helix 21	AC3	C	125	146	Right-handed alpha
Helix 22	AC4	D	5	12	Right-handed alpha
Helix 23	AC5	D	13	15	Right-handed 310
Helix 24	AC6	D	45	48	Right-handed 310
Helix 25	AC7	D	49	55	Right-handed alpha
Helix 26	AC8	D	100	115	Right-handed alpha
Helix 27	AC9	D	116	120	Right-handed 310
Helix 28	AD1	E	7	13	Right-handed alpha
Helix 29	AD2	E	46	60	Right-handed alpha
Helix 30	AD3	E	102	107	Right-handed alpha
Helix 31	AD4	E	110	121	Right-handed alpha
Helix 32	AD5	F	7	12	Right-handed alpha
Helix 33	AD6	F	36	52	Right-handed alpha
Helix 34	AD7	G	84	95	Right-handed alpha
Helix 35	AD8	G	120	138	Right-handed alpha
Helix 36	AD9	H	58	75	Right-handed alpha
Helix 37	AE1	I	134	144	Right-handed alpha
Helix 38	AE2	I	322	334	Right-handed alpha
Helix 39	AE3	I	337	353	Right-handed alpha
Helix 40	AE4	I	370	392	Right-handed alpha
Helix 41	AE5	I	398	405	Right-handed alpha
Helix 42	AE6	I	410	427	Right-handed alpha
Helix 43	AE7	I	432	445	Right-handed alpha
Helix 44	AE8	I	448	453	Right-handed alpha
Helix 45	AE9	I	483	492	Right-handed alpha
Helix 46	AF1	I	513	525	Right-handed alpha
Helix 47	AF2	I	973	984	Right-handed alpha
Helix 48	AF3	I	1030	1044	Right-handed alpha
Helix 49	AF4	I	1048	1065	Right-handed alpha
Helix 50	AF5	I	1067	1073	Right-handed alpha
Helix 51	AF6	I	1081	1086	Right-handed alpha
Helix 52	AF7	I	1094	1102	Right-handed alpha
Helix 53	AF8	I	1103	1105	Right-handed 310
Helix 54	AF9	J	114	128	Right-handed alpha
Helix 55	AG1	J	179	184	Right-handed alpha
Helix 56	AG2	J	185	211	Right-handed alpha
Helix 57	AG3	J	251	265	Right-handed alpha
Helix 58	AG4	J	348	357	Right-handed alpha
Helix 59	AG5	J	357	370	Right-handed alpha
Helix 60	AG6	J	380	392	Right-handed alpha
Helix 61	AG7	J	428	433	Right-handed alpha
Helix 62	AG8	J	480	492	Right-handed alpha
Helix 63	AG9	J	496	523	Right-handed alpha
Helix 64	AH1	J	528	534	Right-handed alpha
Helix 65	AH2	J	535	538	Right-handed 310
Helix 66	AH3	J	543	553	Right-handed alpha
Helix 67	AH4	J	554	557	Right-handed 310

There are 10 sheets in PDB entry 8DHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	A	63	68	parallel
Strand 4	A	139	145	parallel
Strand 5	A	172	178	parallel
Strand 6	A	213	217	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	256	263	anti-parallel
Strand 3	A	335	342	anti-parallel
Strand 4	A	324	328	anti-parallel
Strand 5	A	316	319	anti-parallel
Strand 6	B	251	256	anti-parallel
Strand 7	B	259	267	anti-parallel
Strand 8	B	270	276	anti-parallel
Strand 9	B	202	207	anti-parallel
Strand 10	B	216	218	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	56	60	anti-parallel
Strand 3	B	9	14	parallel
Strand 4	B	85	91	parallel
Strand 5	B	121	124	parallel
Strand 6	B	156	157	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	D	1	2	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	25	first strand
Strand 2	D	89	96	anti-parallel
Strand 3	D	79	86	anti-parallel
Strand 4	D	71	75	anti-parallel
Strand 5	E	70	75	anti-parallel
Strand 6	E	78	80	anti-parallel
Strand 7	E	90	95	anti-parallel
Strand 8	E	19	25	anti-parallel
Strand 9	E	31	33	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	20	first strand
Strand 2	F	83	90	anti-parallel
Strand 3	F	73	80	anti-parallel
Strand 4	F	65	69	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	116	first strand
Strand 2	G	103	106	anti-parallel
Strand 3	G	165	168	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	53	first strand
Strand 2	I	311	318	anti-parallel
Strand 3	I	165	172	anti-parallel
Strand 4	I	154	160	anti-parallel
Strand 5	J	139	145	anti-parallel
Strand 6	J	149	158	anti-parallel
Strand 7	J	168	176	anti-parallel
Strand 8	J	4	9	anti-parallel
Strand 9	J	20	22	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	503	505	first strand
Strand 2	I	996	999	parallel
Strand 3	I	1006	1009	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	417	420	first strand
Strand 2	J	373	377	parallel
Strand 3	J	436	442	parallel
Strand 4	J	464	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DHB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHB