Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DHE entry

There are 4 chains in PDB entry 8DHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	SER 685
B	GLN 26	SER 685
C	GLN 26	SER 685
D	GLN 26	SER 685

There are 40 helices in PDB entry 8DHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	261	263	Right-handed 310
Helix 2	AA2	A	327	342	Right-handed alpha
Helix 3	AA3	A	354	365	Right-handed alpha
Helix 4	AA4	A	388	407	Right-handed alpha
Helix 5	AA5	A	428	443	Right-handed alpha
Helix 6	AA6	A	458	463	Right-handed 310
Helix 7	AA7	A	480	494	Right-handed alpha
Helix 8	AA8	A	528	545	Right-handed alpha
Helix 9	AA9	A	587	598	Right-handed alpha
Helix 10	AB1	B	84	88	Right-handed 310
Helix 11	AB2	B	261	263	Right-handed 310
Helix 12	AB3	B	327	342	Right-handed alpha
Helix 13	AB4	B	354	365	Right-handed alpha
Helix 14	AB5	B	388	407	Right-handed alpha
Helix 15	AB6	B	428	443	Right-handed alpha
Helix 16	AB7	B	458	462	Right-handed 310
Helix 17	AB8	B	480	494	Right-handed alpha
Helix 18	AB9	B	528	545	Right-handed alpha
Helix 19	AC1	B	587	598	Right-handed alpha
Helix 20	AC2	C	84	88	Right-handed 310
Helix 21	AC3	C	180	184	Right-handed 310
Helix 22	AC4	C	260	264	Right-handed 310
Helix 23	AC5	C	327	341	Right-handed alpha
Helix 24	AC6	C	354	365	Right-handed alpha
Helix 25	AC7	C	388	407	Right-handed alpha
Helix 26	AC8	C	428	443	Right-handed alpha
Helix 27	AC9	C	458	463	Right-handed 310
Helix 28	AD1	C	480	494	Right-handed alpha
Helix 29	AD2	C	528	545	Right-handed alpha
Helix 30	AD3	C	587	598	Right-handed alpha
Helix 31	AD4	D	84	88	Right-handed 310
Helix 32	AD5	D	261	263	Right-handed 310
Helix 33	AD6	D	327	341	Right-handed alpha
Helix 34	AD7	D	354	365	Right-handed alpha
Helix 35	AD8	D	388	407	Right-handed alpha
Helix 36	AD9	D	428	443	Right-handed alpha
Helix 37	AE1	D	458	462	Right-handed 310
Helix 38	AE2	D	480	494	Right-handed alpha
Helix 39	AE3	D	528	545	Right-handed alpha
Helix 40	AE4	D	587	598	Right-handed alpha

There are 43 sheets in PDB entry 8DHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	167	172	anti-parallel
Strand 3	A	91	96	anti-parallel
Strand 4	A	122	125	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	74	83	anti-parallel
Strand 4	A	134	143	anti-parallel
Strand 5	A	102	107	anti-parallel
Strand 6	A	110	116	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	198	209	anti-parallel
Strand 3	A	187	192	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	198	209	anti-parallel
Strand 3	A	243	254	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	239	first strand
Strand 2	A	215	225	anti-parallel
Strand 3	A	268	275	anti-parallel
Strand 4	A	280	288	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	264	265	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	300	303	anti-parallel
Strand 3	A	306	307	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	315	first strand
Strand 2	A	345	348	parallel
Strand 3	A	367	371	parallel
Strand 4	A	412	419	parallel
Strand 5	A	448	452	parallel
Strand 6	A	467	470	parallel
Strand 7	A	499	504	parallel
Strand 8	A	549	554	parallel
Strand 9	A	311	315	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	567	first strand
Strand 2	A	570	574	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	618	625	anti-parallel
Strand 3	A	649	656	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	614	first strand
Strand 2	A	673	683	parallel
Strand 3	A	660	670	anti-parallel
Strand 4	A	630	634	anti-parallel
Strand 5	A	637	642	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	167	173	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	122	125	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	36	40	anti-parallel
Strand 3	B	74	83	anti-parallel
Strand 4	B	134	143	anti-parallel
Strand 5	B	102	107	anti-parallel
Strand 6	B	110	116	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	198	209	anti-parallel
Strand 3	B	187	194	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	198	209	anti-parallel
Strand 3	B	243	254	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	239	first strand
Strand 2	B	215	225	anti-parallel
Strand 3	B	268	276	anti-parallel
Strand 4	B	279	288	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	264	265	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	300	303	anti-parallel
Strand 3	B	306	308	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	315	first strand
Strand 2	B	345	348	parallel
Strand 3	B	367	371	parallel
Strand 4	B	412	419	parallel
Strand 5	B	448	452	parallel
Strand 6	B	466	470	parallel
Strand 7	B	498	503	parallel
Strand 8	B	552	554	parallel
Strand 9	B	311	315	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	573	574	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	606	first strand
Strand 2	B	618	625	anti-parallel
Strand 3	B	649	656	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	614	first strand
Strand 2	B	674	683	parallel
Strand 3	B	660	669	anti-parallel
Strand 4	B	630	634	anti-parallel
Strand 5	B	637	642	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	91	96	anti-parallel
Strand 4	C	122	125	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	C	74	82	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	102	107	anti-parallel
Strand 6	C	110	116	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	198	209	anti-parallel
Strand 3	C	187	194	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	198	209	anti-parallel
Strand 3	C	244	254	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	239	first strand
Strand 2	C	215	225	anti-parallel
Strand 3	C	268	276	anti-parallel
Strand 4	C	279	288	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	300	303	anti-parallel
Strand 3	C	306	308	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	315	first strand
Strand 2	C	345	348	parallel
Strand 3	C	367	371	parallel
Strand 4	C	412	419	parallel
Strand 5	C	448	452	parallel
Strand 6	C	467	470	parallel
Strand 7	C	499	504	parallel
Strand 8	C	552	554	parallel
Strand 9	C	311	315	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	561	first strand
Strand 2	C	573	574	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	606	first strand
Strand 2	C	618	625	anti-parallel
Strand 3	C	649	656	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	614	first strand
Strand 2	C	675	683	parallel
Strand 3	C	660	668	anti-parallel
Strand 4	C	630	634	anti-parallel
Strand 5	C	637	642	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	91	96	anti-parallel
Strand 4	D	122	125	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	D	74	83	anti-parallel
Strand 4	D	134	143	anti-parallel
Strand 5	D	102	107	anti-parallel
Strand 6	D	110	116	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	198	209	anti-parallel
Strand 3	D	187	192	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	198	209	anti-parallel
Strand 3	D	243	254	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	239	first strand
Strand 2	D	215	225	anti-parallel
Strand 3	D	268	276	anti-parallel
Strand 4	D	279	288	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	264	265	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	296	first strand
Strand 2	D	300	303	anti-parallel
Strand 3	D	306	307	anti-parallel

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There are 9 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	315	first strand
Strand 2	D	345	348	parallel
Strand 3	D	367	371	parallel
Strand 4	D	412	419	parallel
Strand 5	D	448	452	parallel
Strand 6	D	467	470	parallel
Strand 7	D	499	504	parallel
Strand 8	D	552	554	parallel
Strand 9	D	311	315	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	561	first strand
Strand 2	D	573	574	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	604	606	first strand
Strand 2	D	618	625	anti-parallel
Strand 3	D	649	656	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	614	first strand
Strand 2	D	673	683	parallel
Strand 3	D	660	670	anti-parallel
Strand 4	D	630	634	anti-parallel
Strand 5	D	637	642	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHE