Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DHI entry

There are 2 chains in PDB entry 8DHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 246
B
 GLY -1GLU 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8DHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
53 60Right-handed alpha
Helix 3
AA3
A
88 95Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
117 128Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
144 158Right-handed alpha
Helix 8
AA8
A
160 170Right-handed alpha
Helix 9
AA9
A
171 186Right-handed alpha
Helix 10
AB1
A
187 190Right-handed 310
Helix 11
AB2
A
193 202Right-handed alpha
Helix 12
AB3
A
204 219Right-handed alpha
Helix 13
AB4
A
221 231Right-handed alpha
Helix 14
AB5
A
233 245Right-handed alpha
Helix 15
AB6
B
33 43Right-handed alpha
Helix 16
AB7
B
53 60Right-handed alpha
Helix 17
AB8
B
89 95Right-handed alpha
Helix 18
AB9
B
101 113Right-handed alpha
Helix 19
AC1
B
117 128Right-handed alpha
Helix 20
AC2
B
129 133Right-handed 310
Helix 21
AC3
B
144 158Right-handed alpha
Helix 22
AC4
B
160 170Right-handed alpha
Helix 23
AC5
B
171 186Right-handed alpha
Helix 24
AC6
B
187 190Right-handed 310
Helix 25
AC7
B
193 202Right-handed alpha
Helix 26
AC8
B
204 219Right-handed alpha
Helix 27
AC9
B
221 231Right-handed alpha
Helix 28
AD1
B
233 245Right-handed alpha
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There are 2 sheets in PDB entry 8DHI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
135 138parallel
Strand 4
A
47 50parallel
Strand 5
A
69 72parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
135 138parallel
Strand 4
B
47 50parallel
Strand 5
B
69 72parallel
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