Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DHM entry

There are 2 chains in PDB entry 8DHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 30LEU 476
A
 ILE 30LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8DHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 50Right-handed alpha
Helix 2
AA2
B
51 57Right-handed alpha
Helix 3
AA3
B
63 102Right-handed alpha
Helix 4
AA4
B
106 121Right-handed alpha
Helix 5
AA5
B
122 133Right-handed alpha
Helix 6
AA6
B
137 164Right-handed alpha
Helix 7
AA7
B
165 168Right-handed 310
Helix 8
AA8
B
169 173Right-handed 310
Helix 9
AA9
B
257 284Right-handed alpha
Helix 10
AB1
B
287 294Right-handed alpha
Helix 11
AB2
B
298 305Right-handed alpha
Helix 12
AB3
B
306 333Right-handed alpha
Helix 13
AB4
B
339 353Right-handed alpha
Helix 14
AB5
B
354 362Right-handed alpha
Helix 15
AB6
B
368 398Right-handed alpha
Helix 16
AB7
B
400 405Right-handed alpha
Helix 17
AB8
B
406 410Right-handed 310
Helix 18
AB9
B
415 440Right-handed alpha
Helix 19
AC1
B
443 461Right-handed alpha
Helix 20
AC2
B
461 476Right-handed alpha
Helix 21
AC3
A
33 50Right-handed alpha
Helix 22
AC4
A
51 57Right-handed alpha
Helix 23
AC5
A
63 102Right-handed alpha
Helix 24
AC6
A
106 121Right-handed alpha
Helix 25
AC7
A
122 133Right-handed alpha
Helix 26
AC8
A
137 164Right-handed alpha
Helix 27
AC9
A
165 168Right-handed 310
Helix 28
AD1
A
169 173Right-handed 310
Helix 29
AD2
A
257 284Right-handed alpha
Helix 30
AD3
A
287 294Right-handed alpha
Helix 31
AD4
A
298 305Right-handed alpha
Helix 32
AD5
A
306 333Right-handed alpha
Helix 33
AD6
A
339 353Right-handed alpha
Helix 34
AD7
A
354 362Right-handed alpha
Helix 35
AD8
A
368 398Right-handed alpha
Helix 36
AD9
A
400 405Right-handed alpha
Helix 37
AE1
A
406 410Right-handed 310
Helix 38
AE2
A
415 440Right-handed alpha
Helix 39
AE3
A
443 461Right-handed alpha
Helix 40
AE4
A
461 476Right-handed alpha
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There are 4 sheets in PDB entry 8DHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
104 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
337 338anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
337 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il