Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DHR entry

There are 6 chains in PDB entry 8DHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4LEU 64
A
 VAL 68VAL 150
A
 ILE 152HIS 231
B
 GLY 4LEU 64
B
 VAL 68VAL 150
B
 ILE 152HIS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8DHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
75 81Right-handed 310
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
B
4 9Right-handed 310
Helix 8
AA8
B
56 61Right-handed 310
Helix 9
AA9
B
68 72Right-handed 310
Helix 10
AB1
B
75 81Right-handed 310
Helix 11
AB2
B
82 87Right-handed alpha
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There are 2 sheets in PDB entry 8DHR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
200 208anti-parallel
Strand 3
A
217 227anti-parallel
Strand 4
A
41 48anti-parallel
Strand 5
A
25 36anti-parallel
Strand 6
A
12 22anti-parallel
Strand 7
A
118 128parallel
Strand 8
A
105 115anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
176 187anti-parallel
Strand 11
A
160 170anti-parallel
Strand 12
A
153 155anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
217 227anti-parallel
Strand 4
B
41 48anti-parallel
Strand 5
B
25 36anti-parallel
Strand 6
B
12 22anti-parallel
Strand 7
B
118 128parallel
Strand 8
B
105 115anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
176 187anti-parallel
Strand 11
B
161 170anti-parallel
Strand 12
B
153 154anti-parallel
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