Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DHV entry

There are 2 chains in PDB entry 8DHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 16	LYS 623
B	ALA 17	LYS 624

There are 29 helices in PDB entry 8DHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	92	98	Right-handed 310
Helix 4	AA4	A	135	139	Right-handed 310
Helix 5	AA5	A	219	223	Right-handed 310
Helix 6	AA6	A	331	346	Right-handed alpha
Helix 7	AA7	A	358	369	Right-handed alpha
Helix 8	AA8	A	402	406	Right-handed 310
Helix 9	AA9	A	410	426	Right-handed alpha
Helix 10	AB1	A	446	462	Right-handed alpha
Helix 11	AB2	A	477	481	Right-handed 310
Helix 12	AB3	A	482	487	Right-handed alpha
Helix 13	AB4	A	504	522	Right-handed alpha
Helix 14	AB5	A	548	564	Right-handed alpha
Helix 15	AB6	A	604	616	Right-handed alpha
Helix 16	AB7	B	49	53	Right-handed 310
Helix 17	AB8	B	73	78	Right-handed alpha
Helix 18	AB9	B	92	98	Right-handed 310
Helix 19	AC1	B	135	139	Right-handed 310
Helix 20	AC2	B	331	346	Right-handed alpha
Helix 21	AC3	B	358	369	Right-handed alpha
Helix 22	AC4	B	402	406	Right-handed 310
Helix 23	AC5	B	410	426	Right-handed alpha
Helix 24	AC6	B	446	462	Right-handed alpha
Helix 25	AC7	B	477	481	Right-handed 310
Helix 26	AC8	B	482	487	Right-handed alpha
Helix 27	AC9	B	504	522	Right-handed alpha
Helix 28	AD1	B	548	564	Right-handed alpha
Helix 29	AD2	B	604	616	Right-handed alpha

There are 12 sheets in PDB entry 8DHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	130	133	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	82	89	anti-parallel
Strand 4	A	143	150	anti-parallel
Strand 5	A	110	115	anti-parallel
Strand 6	A	118	124	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	218	first strand
Strand 2	A	224	233	anti-parallel
Strand 3	A	259	264	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	256	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	278	284	anti-parallel
Strand 4	A	287	293	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	304	307	anti-parallel
Strand 3	A	310	311	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	318	first strand
Strand 2	A	349	351	parallel
Strand 3	A	371	375	parallel
Strand 4	A	431	438	parallel
Strand 5	A	468	472	parallel
Strand 6	A	490	493	parallel
Strand 7	A	526	530	parallel
Strand 8	A	569	575	parallel
Strand 9	A	314	318	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	199	204	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	130	133	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	82	88	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	110	115	anti-parallel
Strand 6	B	118	124	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	220	first strand
Strand 2	B	223	233	anti-parallel
Strand 3	B	259	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	254	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	278	284	anti-parallel
Strand 4	B	287	293	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	310	311	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	318	first strand
Strand 2	B	349	351	parallel
Strand 3	B	371	375	parallel
Strand 4	B	431	438	parallel
Strand 5	B	468	472	parallel
Strand 6	B	490	493	parallel
Strand 7	B	526	530	parallel
Strand 8	B	569	575	parallel
Strand 9	B	314	318	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHV