Analysis of interatomic Contacts of Structural Units in PDB entry:
8DHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DHY entry

There are 2 chains in PDB entry 8DHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 66
A
 VAL 70TYR 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8DHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
58 63Right-handed 310
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
77 83Right-handed 310
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
235 239Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8DHY.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 24first strand
Strand 2
A
27 38anti-parallel
Strand 3
A
43 50anti-parallel
Strand 4
A
219 229anti-parallel
Strand 5
A
201 210anti-parallel
Strand 6
A
150 156anti-parallel
Strand 7
A
163 172anti-parallel
Strand 8
A
178 189anti-parallel
Strand 9
A
94 102anti-parallel
Strand 10
A
107 117anti-parallel
Strand 11
A
120 130anti-parallel
Strand 12
A
13 24parallel
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