Analysis of interatomic Contacts of Structural Units in PDB entry:
8DI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DI0 entry

There are 3 chains in PDB entry 8DI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31ASP 511
B
 ARG 31TYR 504
C
 ARG 31LEU 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8DI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
128 136Right-handed alpha
Helix 7
AA7
A
212 227Right-handed alpha
Helix 8
AA8
A
258 263Right-handed alpha
Helix 9
AA9
A
269 274Right-handed alpha
Helix 10
AB1
A
284 287Right-handed 310
Helix 11
AB2
A
288 313Right-handed alpha
Helix 12
AB3
A
332 336Right-handed 310
Helix 13
AB4
A
344 349Right-handed alpha
Helix 14
AB5
A
370 372Right-handed 310
Helix 15
AB6
A
373 382Right-handed alpha
Helix 16
AB7
A
383 388Right-handed 310
Helix 17
AB8
A
397 403Right-handed alpha
Helix 18
AB9
A
477 480Right-handed 310
Helix 19
AC1
A
481 499Right-handed alpha
Helix 20
AC2
A
501 506Right-handed alpha
Helix 21
AC3
B
47 51Right-handed 310
Helix 22
AC4
B
52 57Right-handed alpha
Helix 23
AC5
B
68 76Right-handed alpha
Helix 24
AC6
B
90 101Right-handed alpha
Helix 25
AC7
B
103 108Right-handed alpha
Helix 26
AC8
B
128 136Right-handed alpha
Helix 27
AC9
B
212 227Right-handed alpha
Helix 28
AD1
B
258 263Right-handed alpha
Helix 29
AD2
B
269 274Right-handed alpha
Helix 30
AD3
B
287 312Right-handed alpha
Helix 31
AD4
B
315 317Right-handed 310
Helix 32
AD5
B
332 336Right-handed 310
Helix 33
AD6
B
344 348Right-handed alpha
Helix 34
AD7
B
370 372Right-handed 310
Helix 35
AD8
B
373 382Right-handed alpha
Helix 36
AD9
B
397 402Right-handed alpha
Helix 37
AE1
B
481 499Right-handed alpha
Helix 38
AE2
C
47 51Right-handed 310
Helix 39
AE3
C
52 57Right-handed alpha
Helix 40
AE4
C
68 77Right-handed alpha
Helix 41
AE5
C
90 101Right-handed alpha
Helix 42
AE6
C
103 108Right-handed alpha
Helix 43
AE7
C
128 136Right-handed alpha
Helix 44
AE8
C
164 168Right-handed 310
Helix 45
AE9
C
175 179Right-handed 310
Helix 46
AF1
C
212 227Right-handed alpha
Helix 47
AF2
C
248 252Right-handed 310
Helix 48
AF3
C
258 263Right-handed alpha
Helix 49
AF4
C
269 274Right-handed alpha
Helix 50
AF5
C
284 286Right-handed 310
Helix 51
AF6
C
287 313Right-handed alpha
Helix 52
AF7
C
315 317Right-handed 310
Helix 53
AF8
C
332 336Right-handed 310
Helix 54
AF9
C
344 349Right-handed alpha
Helix 55
AG1
C
370 372Right-handed 310
Helix 56
AG2
C
373 382Right-handed alpha
Helix 57
AG3
C
383 388Right-handed 310
Helix 58
AG4
C
397 403Right-handed alpha
Helix 59
AG5
C
477 480Right-handed 310
Helix 60
AG6
C
481 499Right-handed alpha
Helix 61
AG7
C
501 506Right-handed alpha
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There are 8 sheets in PDB entry 8DI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
139 144parallel
Strand 3
A
238 244parallel
Strand 4
A
33 39parallel
Strand 5
A
319 324parallel
Strand 6
A
352 355anti-parallel
Strand 7
A
79 81anti-parallel
Strand 8
A
363 365parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
206 207anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 422first strand
Strand 2
A
432 442anti-parallel
Strand 3
A
445 451anti-parallel
Strand 4
A
458 465anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
198 200anti-parallel
Strand 3
B
184 188anti-parallel
Strand 4
B
139 145parallel
Strand 5
B
238 243parallel
Strand 6
B
33 37parallel
Strand 7
B
319 324parallel
Strand 8
B
352 355anti-parallel
Strand 9
B
79 81anti-parallel
Strand 10
B
363 365parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
349 350anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 420first strand
Strand 2
B
434 441anti-parallel
Strand 3
B
445 451anti-parallel
Strand 4
B
458 465anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 208first strand
Strand 2
C
198 200anti-parallel
Strand 3
C
184 189anti-parallel
Strand 4
C
139 144parallel
Strand 5
C
238 244parallel
Strand 6
C
33 39parallel
Strand 7
C
319 324parallel
Strand 8
C
352 355anti-parallel
Strand 9
C
79 81anti-parallel
Strand 10
C
363 365parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 421first strand
Strand 2
C
433 442anti-parallel
Strand 3
C
445 451anti-parallel
Strand 4
C
458 465anti-parallel
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