Analysis of interatomic Contacts of Structural Units in PDB entry:
8DI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DI1 entry

There is 1 chain in PDB entry 8DI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ARG 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8DI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
84 94Right-handed alpha
Helix 5
AA5
A
105 114Right-handed alpha
Helix 6
AA6
A
125 135Right-handed alpha
Helix 7
AA7
A
144 158Right-handed alpha
Helix 8
AA8
A
174 185Right-handed alpha
Helix 9
AA9
A
197 203Right-handed alpha
Helix 10
AB1
A
205 224Right-handed alpha
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There are 2 sheets in PDB entry 8DI1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
47 51parallel
Strand 3
A
21 25parallel
Strand 4
A
188 191parallel
Strand 5
A
164 168parallel
Strand 6
A
139 142parallel
Strand 7
A
122 123parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
119 120parallel
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