Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DIM entry

There are 5 chains in PDB entry 8DIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 17	TYR 506
B	VAL 2	VAL 119
D	SER 17	TYR 506
E	VAL 2	VAL 119
G	SER 17	TRP 93

There are 28 helices in PDB entry 8DIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	80	Right-handed alpha
Helix 2	AA2	A	81	88	Right-handed 310
Helix 3	AA3	A	114	123	Right-handed alpha
Helix 4	AA4	A	135	139	Right-handed 310
Helix 5	AA5	A	201	209	Right-handed alpha
Helix 6	AA6	A	381	402	Right-handed alpha
Helix 7	AA7	A	418	470	Right-handed alpha
Helix 8	AA8	A	489	499	Right-handed alpha
Helix 9	AA9	B	87	91	Right-handed 310
Helix 10	AB1	D	73	80	Right-handed alpha
Helix 11	AB2	D	81	88	Right-handed 310
Helix 12	AB3	D	114	123	Right-handed alpha
Helix 13	AB4	D	201	209	Right-handed alpha
Helix 14	AB5	D	381	402	Right-handed alpha
Helix 15	AB6	D	418	470	Right-handed alpha
Helix 16	AB7	D	489	499	Right-handed alpha
Helix 17	AB8	E	87	91	Right-handed 310
Helix 18	AB9	G	73	80	Right-handed alpha
Helix 19	AC1	G	81	88	Right-handed 310
Helix 20	AC2	G	114	123	Right-handed alpha
Helix 21	AC3	G	201	209	Right-handed alpha
Helix 22	AC4	G	381	402	Right-handed alpha
Helix 23	AC5	G	418	470	Right-handed alpha
Helix 24	AC6	G	489	499	Right-handed alpha
Helix 25	AC7	H	87	91	Right-handed 310
Helix 26	AC8	C	80	84	Right-handed 310
Helix 27	AC9	F	80	84	Right-handed 310
Helix 28	AD1	I	80	84	Right-handed 310

There are 48 sheets in PDB entry 8DIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	380	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	19	24	anti-parallel
Strand 4	A	481	484	anti-parallel
Strand 5	A	474	476	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	41	42	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	330	332	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	309	310	parallel
Strand 3	A	322	323	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	96	98	parallel
Strand 3	A	282	284	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	132	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	265	268	anti-parallel
Strand 5	A	165	167	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	132	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	243	251	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	158	160	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	183	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	216	220	anti-parallel
Strand 4	A	224	227	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	296	297	anti-parallel
Strand 3	A	317	318	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	115	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	115	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	108	111	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	380	first strand
Strand 2	D	366	371	anti-parallel
Strand 3	D	19	24	anti-parallel
Strand 4	D	481	484	anti-parallel
Strand 5	D	474	476	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	41	42	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	330	332	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	309	310	parallel
Strand 3	D	322	323	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	96	98	parallel
Strand 3	D	282	284	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	132	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	190	198	anti-parallel
Strand 4	D	265	268	anti-parallel
Strand 5	D	165	167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	132	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	190	198	anti-parallel
Strand 4	D	243	251	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	158	160	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	183	first strand
Strand 2	D	256	261	anti-parallel
Strand 3	D	216	220	anti-parallel
Strand 4	D	224	227	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	303	first strand
Strand 2	D	296	297	anti-parallel
Strand 3	D	317	318	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	115	118	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	115	118	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	108	111	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	376	380	first strand
Strand 2	G	366	371	anti-parallel
Strand 3	G	19	24	anti-parallel
Strand 4	G	481	484	anti-parallel
Strand 5	G	474	476	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	41	42	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	330	332	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	51	first strand
Strand 2	G	309	310	parallel
Strand 3	G	322	323	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	96	98	parallel
Strand 3	G	282	284	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	132	first strand
Strand 2	G	270	276	anti-parallel
Strand 3	G	190	198	anti-parallel
Strand 4	G	265	268	anti-parallel
Strand 5	G	165	167	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	132	first strand
Strand 2	G	270	276	anti-parallel
Strand 3	G	190	198	anti-parallel
Strand 4	G	243	251	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	155	first strand
Strand 2	G	158	160	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	183	first strand
Strand 2	G	256	261	anti-parallel
Strand 3	G	216	220	anti-parallel
Strand 4	G	224	227	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	302	303	first strand
Strand 2	G	296	297	anti-parallel
Strand 3	G	317	318	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	115	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	115	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	108	111	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	106	110	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	106	110	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	99	102	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	99	102	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	71	76	anti-parallel
Strand 3	F	64	68	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	106	110	parallel
Strand 3	I	86	93	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	49	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	106	110	parallel
Strand 3	I	86	93	anti-parallel
Strand 4	I	99	102	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	71	76	anti-parallel
Strand 3	I	63	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIM