Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DIS entry

There are 5 chains in PDB entry 8DIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 17	ILE 341
d	GLY 345	SER 507
E	SER 17	ILE 341
e	GLY 345	SER 507
F	SER 17	PRO 308

There are 27 helices in PDB entry 8DIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	73	80	Right-handed alpha
Helix 2	AA2	D	114	123	Right-handed alpha
Helix 3	AA3	D	135	140	Right-handed alpha
Helix 4	AA4	D	201	210	Right-handed alpha
Helix 5	AA5	d	381	402	Right-handed alpha
Helix 6	AA6	d	418	471	Right-handed alpha
Helix 7	AA7	d	489	497	Right-handed alpha
Helix 8	AA8	d	503	507	Right-handed 310
Helix 9	AA9	E	73	80	Right-handed alpha
Helix 10	AB1	E	114	123	Right-handed alpha
Helix 11	AB2	E	135	140	Right-handed alpha
Helix 12	AB3	E	201	210	Right-handed alpha
Helix 13	AB4	e	381	402	Right-handed alpha
Helix 14	AB5	e	418	471	Right-handed alpha
Helix 15	AB6	e	489	497	Right-handed alpha
Helix 16	AB7	e	503	507	Right-handed 310
Helix 17	AB8	F	73	80	Right-handed alpha
Helix 18	AB9	F	114	123	Right-handed alpha
Helix 19	AC1	F	135	140	Right-handed alpha
Helix 20	AC2	F	201	210	Right-handed alpha
Helix 21	AC3	f	381	402	Right-handed alpha
Helix 22	AC4	f	418	471	Right-handed alpha
Helix 23	AC5	f	489	497	Right-handed alpha
Helix 24	AC6	f	503	507	Right-handed 310
Helix 25	AC7	C	28	32	Right-handed 310
Helix 26	AC8	C	80	84	Right-handed 310
Helix 27	AC9	L	28	32	Right-handed 310

There are 48 sheets in PDB entry 8DIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	376	380	first strand
Strand 2	d	366	371	anti-parallel
Strand 3	D	19	24	anti-parallel
Strand 4	d	481	484	anti-parallel
Strand 5	d	474	476	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	41	43	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	330	332	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	309	310	parallel
Strand 3	D	322	323	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	289	294	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	96	98	parallel
Strand 3	D	282	284	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	132	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	189	198	anti-parallel
Strand 4	D	265	268	anti-parallel
Strand 5	D	165	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	132	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	189	198	anti-parallel
Strand 4	D	243	251	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	158	160	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	183	first strand
Strand 2	D	256	261	anti-parallel
Strand 3	D	216	220	anti-parallel
Strand 4	D	224	227	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	296	298	anti-parallel
Strand 3	D	317	318	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	376	380	first strand
Strand 2	e	366	371	anti-parallel
Strand 3	E	19	24	anti-parallel
Strand 4	e	481	484	anti-parallel
Strand 5	e	474	476	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	41	43	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	330	332	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	309	310	parallel
Strand 3	E	322	323	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	61	first strand
Strand 2	E	289	294	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	96	98	parallel
Strand 3	E	282	284	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	132	first strand
Strand 2	E	270	276	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	265	268	anti-parallel
Strand 5	E	165	167	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	132	first strand
Strand 2	E	270	276	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	243	251	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	158	160	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	183	first strand
Strand 2	E	256	261	anti-parallel
Strand 3	E	216	220	anti-parallel
Strand 4	E	224	227	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	302	first strand
Strand 2	E	296	298	anti-parallel
Strand 3	E	317	318	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	376	380	first strand
Strand 2	f	366	371	anti-parallel
Strand 3	F	19	24	anti-parallel
Strand 4	f	481	484	anti-parallel
Strand 5	f	474	476	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	41	43	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	330	332	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	51	first strand
Strand 2	F	309	310	parallel
Strand 3	F	322	323	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	289	294	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	96	98	parallel
Strand 3	F	282	284	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	132	first strand
Strand 2	F	270	276	anti-parallel
Strand 3	F	189	198	anti-parallel
Strand 4	F	265	268	anti-parallel
Strand 5	F	165	167	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	132	first strand
Strand 2	F	270	276	anti-parallel
Strand 3	F	189	198	anti-parallel
Strand 4	F	243	251	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	158	160	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	183	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	216	220	anti-parallel
Strand 4	F	224	227	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	302	first strand
Strand 2	F	296	298	anti-parallel
Strand 3	F	317	318	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	119	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	119	parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	69	72	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	119	parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	107	110	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	23	first strand
Strand 2	C	71	77	anti-parallel
Strand 3	C	63	67	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	99	102	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	107	110	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	23	first strand
Strand 2	G	71	77	anti-parallel
Strand 3	G	63	67	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	49	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	99	102	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	107	110	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	71	77	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	99	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIS