Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DIT entry

There are 3 chains in PDB entry 8DIT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	THR 655
B	MET 1	LYS 834
C	MET 1	MET 736

There are100 helices in PDB entry 8DIT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	12	26	Right-handed alpha
Helix 3	AA3	A	36	47	Right-handed alpha
Helix 4	AA4	A	48	54	Right-handed alpha
Helix 5	AA5	A	83	101	Right-handed alpha
Helix 6	AA6	A	116	126	Right-handed alpha
Helix 7	AA7	A	155	163	Right-handed alpha
Helix 8	AA8	A	166	184	Right-handed alpha
Helix 9	AA9	A	193	216	Right-handed alpha
Helix 10	AB1	A	239	241	Right-handed 310
Helix 11	AB2	A	243	247	Right-handed 310
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	308	313	Right-handed alpha
Helix 14	AB5	A	316	336	Right-handed alpha
Helix 15	AB6	A	343	352	Right-handed alpha
Helix 16	AB7	A	353	379	Right-handed alpha
Helix 17	AB8	A	382	395	Right-handed alpha
Helix 18	AB9	A	398	401	Right-handed 310
Helix 19	AC1	A	402	412	Right-handed alpha
Helix 20	AC2	A	415	431	Right-handed alpha
Helix 21	AC3	A	434	450	Right-handed alpha
Helix 22	AC4	A	452	463	Right-handed alpha
Helix 23	AC5	A	491	499	Right-handed alpha
Helix 24	AC6	A	513	519	Right-handed 310
Helix 25	AC7	A	523	534	Right-handed alpha
Helix 26	AC8	A	534	542	Right-handed alpha
Helix 27	AC9	A	548	550	Right-handed 310
Helix 28	AD1	A	551	556	Right-handed alpha
Helix 29	AD2	A	565	570	Right-handed alpha
Helix 30	AD3	A	585	594	Right-handed alpha
Helix 31	AD4	A	614	627	Right-handed alpha
Helix 32	AD5	A	648	653	Right-handed alpha
Helix 33	AD6	B	28	32	Right-handed 310
Helix 34	AD7	B	127	132	Right-handed alpha
Helix 35	AD8	B	324	332	Right-handed alpha
Helix 36	AD9	B	337	351	Right-handed alpha
Helix 37	AE1	B	354	362	Right-handed alpha
Helix 38	AE2	B	363	365	Right-handed 310
Helix 39	AE3	B	366	379	Right-handed alpha
Helix 40	AE4	B	383	399	Right-handed alpha
Helix 41	AE5	B	405	422	Right-handed alpha
Helix 42	AE6	B	432	439	Right-handed alpha
Helix 43	AE7	B	442	450	Right-handed alpha
Helix 44	AE8	B	454	464	Right-handed alpha
Helix 45	AE9	B	468	483	Right-handed alpha
Helix 46	AF1	B	486	499	Right-handed alpha
Helix 47	AF2	B	505	516	Right-handed alpha
Helix 48	AF3	B	518	526	Right-handed alpha
Helix 49	AF4	B	527	529	Right-handed 310
Helix 50	AF5	B	531	542	Right-handed alpha
Helix 51	AF6	B	546	556	Right-handed alpha
Helix 52	AF7	B	557	572	Right-handed alpha
Helix 53	AF8	B	574	582	Right-handed alpha
Helix 54	AF9	B	584	596	Right-handed alpha
Helix 55	AG1	B	605	616	Right-handed alpha
Helix 56	AG2	B	618	633	Right-handed alpha
Helix 57	AG3	B	638	647	Right-handed alpha
Helix 58	AG4	B	648	650	Right-handed 310
Helix 59	AG5	B	657	682	Right-handed alpha
Helix 60	AG6	B	689	700	Right-handed alpha
Helix 61	AG7	B	702	713	Right-handed alpha
Helix 62	AG8	B	716	731	Right-handed alpha
Helix 63	AG9	B	733	742	Right-handed alpha
Helix 64	AH1	B	749	755	Right-handed alpha
Helix 65	AH2	B	762	767	Right-handed alpha
Helix 66	AH3	B	768	776	Right-handed 310
Helix 67	AH4	B	777	778	Right-handed 310
Helix 68	AH5	B	779	788	Right-handed alpha
Helix 69	AH6	B	790	801	Right-handed alpha
Helix 70	AH7	B	803	815	Right-handed alpha
Helix 71	AH8	B	817	829	Right-handed alpha
Helix 72	AH9	C	2	23	Right-handed alpha
Helix 73	AI1	C	82	86	Right-handed 310
Helix 74	AI2	C	123	126	Right-handed 310
Helix 75	AI3	C	166	170	Right-handed 310
Helix 76	AI4	C	219	223	Right-handed 310
Helix 77	AI5	C	224	238	Right-handed alpha
Helix 78	AI6	C	322	328	Right-handed alpha
Helix 79	AI7	C	401	412	Right-handed alpha
Helix 80	AI8	C	418	423	Right-handed alpha
Helix 81	AI9	C	425	444	Right-handed alpha
Helix 82	AJ1	C	445	456	Right-handed alpha
Helix 83	AJ2	C	459	470	Right-handed alpha
Helix 84	AJ3	C	472	487	Right-handed alpha
Helix 85	AJ4	C	491	498	Right-handed alpha
Helix 86	AJ5	C	498	520	Right-handed alpha
Helix 87	AJ6	C	520	527	Right-handed alpha
Helix 88	AJ7	C	528	550	Right-handed alpha
Helix 89	AJ8	C	555	567	Right-handed alpha
Helix 90	AJ9	C	568	579	Right-handed alpha
Helix 91	AK1	C	581	593	Right-handed alpha
Helix 92	AK2	C	594	605	Right-handed alpha
Helix 93	AK3	C	607	631	Right-handed alpha
Helix 94	AK4	C	637	642	Right-handed 310
Helix 95	AK5	C	643	652	Right-handed alpha
Helix 96	AK6	C	654	673	Right-handed alpha
Helix 97	AK7	C	676	690	Right-handed alpha
Helix 98	AK8	C	694	706	Right-handed alpha
Helix 99	AK9	C	712	724	Right-handed alpha
Helix 100	AL1	C	728	736	Right-handed alpha

There are 17 sheets in PDB entry 8DIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	31	35	parallel
Strand 3	A	74	78	parallel
Strand 4	A	106	111	parallel
Strand 5	A	133	136	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	148	150	anti-parallel
Strand 3	A	631	637	parallel
Strand 4	A	602	609	parallel
Strand 5	A	230	237	parallel
Strand 6	A	188	192	parallel
Strand 7	A	576	580	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	640	641	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	316	322	anti-parallel
Strand 4	B	308	311	anti-parallel
Strand 5	B	302	305	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	69	73	anti-parallel
Strand 4	B	79	84	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	95	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	109	113	anti-parallel
Strand 4	B	120	124	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	145	148	anti-parallel
Strand 3	B	153	155	anti-parallel
Strand 4	B	165	168	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	181	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	200	204	anti-parallel
Strand 4	B	209	213	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	224	first strand
Strand 2	B	230	235	anti-parallel
Strand 3	B	240	244	anti-parallel
Strand 4	B	250	254	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	273	275	anti-parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	290	294	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	394	399	anti-parallel
Strand 3	C	386	389	anti-parallel
Strand 4	C	376	379	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	49	first strand
Strand 2	C	52	57	anti-parallel
Strand 3	C	62	66	anti-parallel
Strand 4	C	73	76	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	100	104	anti-parallel
Strand 3	C	109	112	anti-parallel
Strand 4	C	120	121	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	136	first strand
Strand 2	C	144	151	anti-parallel
Strand 3	C	155	162	anti-parallel
Strand 4	C	176	180	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	200	207	anti-parallel
Strand 3	C	210	217	anti-parallel
Strand 4	C	241	244	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	278	283	anti-parallel
Strand 3	C	286	289	anti-parallel
Strand 4	C	310	312	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	350	355	anti-parallel
Strand 4	C	361	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DIT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DIT