Analysis of interatomic Contacts of Structural Units in PDB entry:
8DJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DJ2 entry

There are 2 chains in PDB entry 8DJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 772GLU 916
B
 PRO 772GLU 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 8DJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
796 803Right-handed alpha
Helix 2
AA2
A
907 909Right-handed 310
Helix 3
AA3
B
796 803Right-handed alpha
Helix 4
AA4
B
907 909Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8DJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 786first strand
Strand 2
A
775 782anti-parallel
Strand 3
A
804 813anti-parallel
Strand 4
A
855 864anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 795first strand
Strand 2
A
911 914parallel
Strand 3
A
872 881anti-parallel
Strand 4
A
820 831anti-parallel
Strand 5
A
834 848anti-parallel
Strand 6
B
834 848anti-parallel
Strand 7
B
820 831anti-parallel
Strand 8
B
872 881anti-parallel
Strand 9
B
911 914anti-parallel
Strand 10
B
793 795parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 902first strand
Strand 2
A
872 881anti-parallel
Strand 3
A
820 831anti-parallel
Strand 4
A
834 848anti-parallel
Strand 5
B
834 848anti-parallel
Strand 6
B
820 831anti-parallel
Strand 7
B
872 881anti-parallel
Strand 8
B
899 902anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
785 786first strand
Strand 2
B
775 782anti-parallel
Strand 3
B
804 813anti-parallel
Strand 4
B
855 864anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il