Analysis of interatomic Contacts of Structural Units in PDB entry:
8DJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DJ3 entry

There are 2 chains in PDB entry 8DJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57SER 302
B
 THR 57GLN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8DJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 105Right-handed alpha
Helix 2
AA2
A
115 129Right-handed alpha
Helix 3
AA3
A
158 165Right-handed alpha
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
239 253Right-handed alpha
Helix 6
AA6
A
257 272Right-handed alpha
Helix 7
AA7
B
79 83Right-handed 310
Helix 8
AA8
B
89 105Right-handed alpha
Helix 9
AA9
B
115 129Right-handed alpha
Helix 10
AB1
B
159 165Right-handed alpha
Helix 11
AB2
B
171 175Right-handed 310
Helix 12
AB3
B
239 253Right-handed alpha
Helix 13
AB4
B
257 272Right-handed alpha
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There are 3 sheets in PDB entry 8DJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
68 74parallel
Strand 3
A
137 144parallel
Strand 4
A
179 186parallel
Strand 5
A
219 223parallel
Strand 6
A
290 293anti-parallel
Strand 7
B
290 293anti-parallel
Strand 8
B
219 223anti-parallel
Strand 9
B
179 184parallel
Strand 10
B
137 142parallel
Strand 11
B
68 74parallel
Strand 12
B
106 112parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
156 157anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
149 151anti-parallel
Strand 3
B
156 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il