Analysis of interatomic Contacts of Structural Units in PDB entry:
8DJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DJG entry

There are 6 chains in PDB entry 8DJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1CYS 228
B
THR 6CYS 215
C
GLU 4CYS 228
D
THR 6CYS 215
E
VAL 29TYR 126
F
VAL 29HIS 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8DJG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
31 33Right-handed 310
Helix 2
AA2
A
77 79Right-handed 310
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
168 170Right-handed 310
Helix 5
AA5
B
80 84Right-handed 310
Helix 6
AA6
B
122 129Right-handed alpha
Helix 7
AA7
B
184 188Right-handed alpha
Helix 8
AA8
C
31 35Right-handed 310
Helix 9
AA9
C
90 94Right-handed 310
Helix 10
AB1
C
168 170Right-handed 310
Helix 11
AB2
C
199 201Right-handed 310
Helix 12
AB3
C
213 216Right-handed 310
Helix 13
AB4
D
80 84Right-handed 310
Helix 14
AB5
D
122 128Right-handed alpha
Helix 15
AB6
D
184 188Right-handed alpha
Helix 16
AB7
E
69 74Right-handed 310
Helix 17
AB8
E
82 92Right-handed alpha
Helix 18
AB9
F
69 74Right-handed 310
Helix 19
AC1
F
81 92Right-handed alpha
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There are 22 sheets in PDB entry 8DJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 10first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 15first strand
Strand 2
A
119 123parallel
Strand 3
A
95 103anti-parallel
Strand 4
A
35 42anti-parallel
Strand 5
A
48 54anti-parallel
Strand 6
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 136first strand
Strand 2
A
148 157anti-parallel
Strand 3
A
188 196anti-parallel
Strand 4
A
175 177anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 136first strand
Strand 2
A
148 157anti-parallel
Strand 3
A
188 196anti-parallel
Strand 4
A
181 182anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 166first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
217 222anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 14first strand
Strand 2
B
103 107parallel
Strand 3
B
86 92anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 14first strand
Strand 2
B
103 107parallel
Strand 3
B
86 92anti-parallel
Strand 4
B
97 99anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
63 68first strand
Strand 2
B
71 76anti-parallel
Strand 3
B
20 23anti-parallel
Strand 4
D
155 157parallel
Strand 5
D
145 151anti-parallel
Strand 6
D
192 199anti-parallel
Strand 7
D
206 211anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
115 119first strand
Strand 2
B
130 140anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
160 164anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
206 211first strand
Strand 2
B
192 198anti-parallel
Strand 3
B
146 151anti-parallel
Strand 4
B
154 157anti-parallel
Strand 5
D
19 23parallel
Strand 6
D
71 76anti-parallel
Strand 7
D
63 68anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
6 10first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 76anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
14 15first strand
Strand 2
C
119 123parallel
Strand 3
C
95 100anti-parallel
Strand 4
C
37 42anti-parallel
Strand 5
C
48 54anti-parallel
Strand 6
C
61 63anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 136first strand
Strand 2
C
147 157anti-parallel
Strand 3
C
188 197anti-parallel
Strand 4
C
175 177anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 136first strand
Strand 2
C
147 157anti-parallel
Strand 3
C
188 197anti-parallel
Strand 4
C
181 182anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
163 166first strand
Strand 2
C
208 212anti-parallel
Strand 3
C
217 219anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
103 107parallel
Strand 3
D
86 92anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 50anti-parallel
Strand 6
D
54 55anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
103 107parallel
Strand 3
D
86 92anti-parallel
Strand 4
D
97 99anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
115 119first strand
Strand 2
D
130 140anti-parallel
Strand 3
D
174 183anti-parallel
Strand 4
D
160 164anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
31 36first strand
Strand 2
E
116 124anti-parallel
Strand 3
E
50 59anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
40 44first strand
Strand 2
E
96 100anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
30 36first strand
Strand 2
F
116 124anti-parallel
Strand 3
F
50 59anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
40 44first strand
Strand 2
F
96 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il