Analysis of interatomic Contacts of Structural Units in PDB entry:
8DJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DJM entry

There are 5 chains in PDB entry 8DJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 0ALA 275
B
 SER 41LEU 338
C
 ALA 264VAL 383
L
 ASP 20ILE 125
H
 GLU 20VAL 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8DJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 16Right-handed alpha
Helix 2
AA2
A
16 33Right-handed alpha
Helix 3
AA3
A
62 85Right-handed alpha
Helix 4
AA4
A
88 113Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
133 146Right-handed alpha
Helix 7
AA7
A
149 181Right-handed alpha
Helix 8
AA8
A
182 185Right-handed 310
Helix 9
AA9
A
187 223Right-handed alpha
Helix 10
AB1
A
235 247Right-handed alpha
Helix 11
AB2
A
250 273Right-handed alpha
Helix 12
AB3
B
42 47Right-handed alpha
Helix 13
AB4
B
48 53Right-handed 310
Helix 14
AB5
B
56 77Right-handed alpha
Helix 15
AB6
B
80 106Right-handed alpha
Helix 16
AB7
B
127 153Right-handed alpha
Helix 17
AB8
B
156 165Right-handed alpha
Helix 18
AB9
B
170 175Right-handed alpha
Helix 19
AC1
B
182 208Right-handed alpha
Helix 20
AC2
B
212 218Right-handed alpha
Helix 21
AC3
B
218 236Right-handed alpha
Helix 22
AC4
B
236 244Right-handed alpha
Helix 23
AC5
B
247 253Right-handed alpha
Helix 24
AC6
B
253 279Right-handed alpha
Helix 25
AC7
B
280 288Right-handed 310
Helix 26
AC8
B
289 299Right-handed alpha
Helix 27
AC9
B
310 330Right-handed alpha
Helix 28
AD1
C
265 286Right-handed alpha
Helix 29
AD2
C
288 309Right-handed alpha
Helix 30
AD3
C
311 315Right-handed 310
Helix 31
AD4
C
321 346Right-handed alpha
Helix 32
AD5
C
350 367Right-handed alpha
Helix 33
AD6
C
367 383Right-handed alpha
Helix 34
AD7
L
98 102Right-handed 310
Helix 35
AD8
H
81 84Right-handed 310
Helix 36
AD9
H
106 109Right-handed 310
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There are 6 sheets in PDB entry 8DJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 25first strand
Strand 2
L
42 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
38 39first strand
Strand 2
L
91 94anti-parallel
Strand 3
L
82 84anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
72 73first strand
Strand 2
L
64 68anti-parallel
Strand 3
L
53 57anti-parallel
Strand 4
L
104 108anti-parallel
Strand 5
L
121 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
88 92anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 30first strand
Strand 2
H
135 136parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
77 79first strand
Strand 2
H
63 70anti-parallel
Strand 3
H
54 59anti-parallel
Strand 4
H
111 117anti-parallel
Strand 5
H
128 129anti-parallel
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