Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DK1 entry

There are 8 chains in PDB entry 8DK1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	ARG 371
B	ALA 5	ARG 371
C	SER 10	TRP 1082
D	SER 10	TRP 1082
E	THR 48	GLY 236
F	THR 48	GLY 236
G	THR 48	GLY 236
H	THR 48	GLY 236

There are116 helices in PDB entry 8DK1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	19	Right-handed alpha
Helix 2	AA2	A	19	26	Right-handed alpha
Helix 3	AA3	A	29	41	Right-handed alpha
Helix 4	AA4	A	52	63	Right-handed alpha
Helix 5	AA5	A	77	91	Right-handed alpha
Helix 6	AA6	A	104	116	Right-handed alpha
Helix 7	AA7	A	125	143	Right-handed alpha
Helix 8	AA8	A	148	170	Right-handed alpha
Helix 9	AA9	A	177	193	Right-handed alpha
Helix 10	AB1	A	194	197	Right-handed 310
Helix 11	AB2	A	198	220	Right-handed alpha
Helix 12	AB3	A	224	234	Right-handed alpha
Helix 13	AB4	A	241	255	Right-handed alpha
Helix 14	AB5	A	256	272	Right-handed alpha
Helix 15	AB6	A	275	280	Right-handed alpha
Helix 16	AB7	A	281	290	Right-handed alpha
Helix 17	AB8	A	290	320	Right-handed alpha
Helix 18	AB9	A	321	339	Right-handed alpha
Helix 19	AC1	A	340	342	Right-handed 310
Helix 20	AC2	A	346	351	Right-handed alpha
Helix 21	AC3	B	6	19	Right-handed alpha
Helix 22	AC4	B	19	26	Right-handed alpha
Helix 23	AC5	B	29	41	Right-handed alpha
Helix 24	AC6	B	52	63	Right-handed alpha
Helix 25	AC7	B	77	91	Right-handed alpha
Helix 26	AC8	B	104	116	Right-handed alpha
Helix 27	AC9	B	125	143	Right-handed alpha
Helix 28	AD1	B	146	170	Right-handed alpha
Helix 29	AD2	B	177	193	Right-handed alpha
Helix 30	AD3	B	194	197	Right-handed 310
Helix 31	AD4	B	198	220	Right-handed alpha
Helix 32	AD5	B	224	234	Right-handed alpha
Helix 33	AD6	B	241	255	Right-handed alpha
Helix 34	AD7	B	256	272	Right-handed alpha
Helix 35	AD8	B	275	280	Right-handed alpha
Helix 36	AD9	B	281	290	Right-handed alpha
Helix 37	AE1	B	290	320	Right-handed alpha
Helix 38	AE2	B	321	339	Right-handed alpha
Helix 39	AE3	B	340	342	Right-handed 310
Helix 40	AE4	B	346	351	Right-handed alpha
Helix 41	AE5	C	48	59	Right-handed alpha
Helix 42	AE6	C	79	86	Right-handed alpha
Helix 43	AE7	C	135	137	Right-handed 310
Helix 44	AE8	C	152	164	Right-handed alpha
Helix 45	AE9	C	165	171	Right-handed alpha
Helix 46	AF1	C	183	195	Right-handed alpha
Helix 47	AF2	C	200	208	Right-handed alpha
Helix 48	AF3	C	216	224	Right-handed alpha
Helix 49	AF4	C	231	274	Right-handed alpha
Helix 50	AF5	C	793	808	Right-handed alpha
Helix 51	AF6	C	821	835	Right-handed alpha
Helix 52	AF7	C	835	855	Right-handed alpha
Helix 53	AF8	C	855	882	Right-handed alpha
Helix 54	AF9	C	901	917	Right-handed alpha
Helix 55	AG1	C	918	920	Right-handed 310
Helix 56	AG2	C	924	944	Right-handed alpha
Helix 57	AG3	C	947	955	Right-handed alpha
Helix 58	AG4	C	956	958	Right-handed 310
Helix 59	AG5	C	989	1005	Right-handed alpha
Helix 60	AG6	C	1028	1043	Right-handed alpha
Helix 61	AG7	C	1057	1062	Right-handed alpha
Helix 62	AG8	D	48	59	Right-handed alpha
Helix 63	AG9	D	79	86	Right-handed alpha
Helix 64	AH1	D	135	137	Right-handed 310
Helix 65	AH2	D	152	164	Right-handed alpha
Helix 66	AH3	D	165	170	Right-handed alpha
Helix 67	AH4	D	171	174	Right-handed 310
Helix 68	AH5	D	183	195	Right-handed alpha
Helix 69	AH6	D	200	208	Right-handed alpha
Helix 70	AH7	D	216	224	Right-handed alpha
Helix 71	AH8	D	231	274	Right-handed alpha
Helix 72	AH9	D	793	808	Right-handed alpha
Helix 73	AI1	D	818	820	Right-handed 310
Helix 74	AI2	D	821	835	Right-handed alpha
Helix 75	AI3	D	835	855	Right-handed alpha
Helix 76	AI4	D	855	881	Right-handed alpha
Helix 77	AI5	D	901	917	Right-handed alpha
Helix 78	AI6	D	918	920	Right-handed 310
Helix 79	AI7	D	924	944	Right-handed alpha
Helix 80	AI8	D	947	955	Right-handed alpha
Helix 81	AI9	D	956	958	Right-handed 310
Helix 82	AJ1	D	989	1005	Right-handed alpha
Helix 83	AJ2	D	1028	1043	Right-handed alpha
Helix 84	AJ3	D	1057	1062	Right-handed alpha
Helix 85	AJ4	E	49	63	Right-handed alpha
Helix 86	AJ5	E	70	79	Right-handed alpha
Helix 87	AJ6	E	80	89	Right-handed alpha
Helix 88	AJ7	E	130	150	Right-handed alpha
Helix 89	AJ8	E	162	174	Right-handed alpha
Helix 90	AJ9	E	178	196	Right-handed alpha
Helix 91	AK1	E	211	217	Right-handed 310
Helix 92	AK2	E	219	236	Right-handed alpha
Helix 93	AK3	F	49	63	Right-handed alpha
Helix 94	AK4	F	70	79	Right-handed alpha
Helix 95	AK5	F	80	89	Right-handed alpha
Helix 96	AK6	F	130	150	Right-handed alpha
Helix 97	AK7	F	162	174	Right-handed alpha
Helix 98	AK8	F	178	195	Right-handed alpha
Helix 99	AK9	F	211	217	Right-handed 310
Helix 100	AL1	F	219	235	Right-handed alpha
Helix 101	AL2	G	49	63	Right-handed alpha
Helix 102	AL3	G	70	79	Right-handed alpha
Helix 103	AL4	G	80	89	Right-handed alpha
Helix 104	AL5	G	130	150	Right-handed alpha
Helix 105	AL6	G	162	174	Right-handed alpha
Helix 106	AL7	G	178	196	Right-handed alpha
Helix 107	AL8	G	211	217	Right-handed 310
Helix 108	AL9	G	219	236	Right-handed alpha
Helix 109	AM1	H	49	63	Right-handed alpha
Helix 110	AM2	H	70	79	Right-handed alpha
Helix 111	AM3	H	80	89	Right-handed alpha
Helix 112	AM4	H	130	150	Right-handed alpha
Helix 113	AM5	H	162	174	Right-handed alpha
Helix 114	AM6	H	178	195	Right-handed alpha
Helix 115	AM7	H	211	217	Right-handed 310
Helix 116	AM8	H	219	235	Right-handed alpha

There are 16 sheets in PDB entry 8DK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	101	103	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	101	103	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	14	21	anti-parallel
Strand 3	C	106	116	anti-parallel
Strand 4	C	119	129	anti-parallel
Strand 5	C	139	146	anti-parallel
Strand 6	C	178	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1017	1021	first strand
Strand 2	C	1045	1050	parallel
Strand 3	C	38	42	parallel
Strand 4	C	1065	1070	parallel
Strand 5	C	1075	1080	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	893	898	first strand
Strand 2	C	960	965	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	14	21	anti-parallel
Strand 3	D	106	116	anti-parallel
Strand 4	D	119	129	anti-parallel
Strand 5	D	139	146	anti-parallel
Strand 6	D	178	181	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1017	1021	first strand
Strand 2	D	1045	1050	parallel
Strand 3	D	38	42	parallel
Strand 4	D	1065	1071	parallel
Strand 5	D	1074	1080	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	893	898	first strand
Strand 2	D	960	965	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	103	107	anti-parallel
Strand 3	E	94	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	207	210	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	103	108	anti-parallel
Strand 3	F	93	98	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	207	210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	103	107	anti-parallel
Strand 3	G	94	98	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	207	210	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	66	first strand
Strand 2	H	103	108	anti-parallel
Strand 3	H	93	98	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	207	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DK1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK1