Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DK2 entry

There are 10 chains in PDB entry 8DK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	TRP 497
B	ALA 5	ILE 363
C	SER 10	HIS 1088
D	SER 10	GLU 1083
F	THR 48	GLN 110
G	THR 48	GLY 236
H	THR 48	GLY 236
I	THR 48	GLY 236
P	T 3	T 28
Q	A 6	A 31

There are119 helices in PDB entry 8DK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	19	Right-handed alpha
Helix 2	AA2	A	19	27	Right-handed alpha
Helix 3	AA3	A	29	41	Right-handed alpha
Helix 4	AA4	A	52	63	Right-handed alpha
Helix 5	AA5	A	77	91	Right-handed alpha
Helix 6	AA6	A	104	116	Right-handed alpha
Helix 7	AA7	A	125	143	Right-handed alpha
Helix 8	AA8	A	148	170	Right-handed alpha
Helix 9	AA9	A	177	194	Right-handed alpha
Helix 10	AB1	A	195	197	Right-handed 310
Helix 11	AB2	A	198	220	Right-handed alpha
Helix 12	AB3	A	224	234	Right-handed alpha
Helix 13	AB4	A	241	255	Right-handed alpha
Helix 14	AB5	A	256	272	Right-handed alpha
Helix 15	AB6	A	275	280	Right-handed alpha
Helix 16	AB7	A	281	290	Right-handed alpha
Helix 17	AB8	A	290	320	Right-handed alpha
Helix 18	AB9	A	321	339	Right-handed alpha
Helix 19	AC1	A	340	342	Right-handed 310
Helix 20	AC2	A	346	351	Right-handed alpha
Helix 21	AC3	A	409	425	Right-handed alpha
Helix 22	AC4	A	429	437	Right-handed alpha
Helix 23	AC5	A	445	457	Right-handed alpha
Helix 24	AC6	B	6	19	Right-handed alpha
Helix 25	AC7	B	19	26	Right-handed alpha
Helix 26	AC8	B	29	41	Right-handed alpha
Helix 27	AC9	B	52	63	Right-handed alpha
Helix 28	AD1	B	77	91	Right-handed alpha
Helix 29	AD2	B	104	117	Right-handed alpha
Helix 30	AD3	B	125	143	Right-handed alpha
Helix 31	AD4	B	146	170	Right-handed alpha
Helix 32	AD5	B	177	194	Right-handed alpha
Helix 33	AD6	B	195	197	Right-handed 310
Helix 34	AD7	B	198	220	Right-handed alpha
Helix 35	AD8	B	224	234	Right-handed alpha
Helix 36	AD9	B	241	255	Right-handed alpha
Helix 37	AE1	B	256	272	Right-handed alpha
Helix 38	AE2	B	275	280	Right-handed alpha
Helix 39	AE3	B	281	290	Right-handed alpha
Helix 40	AE4	B	290	320	Right-handed alpha
Helix 41	AE5	B	321	339	Right-handed alpha
Helix 42	AE6	B	340	342	Right-handed 310
Helix 43	AE7	B	346	351	Right-handed alpha
Helix 44	AE8	C	48	59	Right-handed alpha
Helix 45	AE9	C	79	86	Right-handed alpha
Helix 46	AF1	C	135	139	Right-handed 310
Helix 47	AF2	C	152	162	Right-handed alpha
Helix 48	AF3	C	164	175	Right-handed alpha
Helix 49	AF4	C	183	196	Right-handed alpha
Helix 50	AF5	C	200	209	Right-handed alpha
Helix 51	AF6	C	216	224	Right-handed alpha
Helix 52	AF7	C	233	240	Right-handed alpha
Helix 53	AF8	C	241	342	Right-handed alpha
Helix 54	AF9	C	692	741	Right-handed alpha
Helix 55	AG1	C	746	757	Right-handed alpha
Helix 56	AG2	C	766	808	Right-handed alpha
Helix 57	AG3	C	820	848	Right-handed alpha
Helix 58	AG4	C	852	881	Right-handed alpha
Helix 59	AG5	C	903	918	Right-handed alpha
Helix 60	AG6	C	928	943	Right-handed alpha
Helix 61	AG7	C	947	955	Right-handed alpha
Helix 62	AG8	C	956	958	Right-handed 310
Helix 63	AG9	C	985	1005	Right-handed alpha
Helix 64	AH1	C	1006	1010	Right-handed 310
Helix 65	AH2	C	1028	1042	Right-handed alpha
Helix 66	AH3	C	1055	1062	Right-handed alpha
Helix 67	AH4	C	1082	1087	Right-handed alpha
Helix 68	AH5	D	48	58	Right-handed alpha
Helix 69	AH6	D	68	72	Right-handed 310
Helix 70	AH7	D	79	86	Right-handed alpha
Helix 71	AH8	D	152	163	Right-handed alpha
Helix 72	AH9	D	164	170	Right-handed alpha
Helix 73	AI1	D	171	173	Right-handed 310
Helix 74	AI2	D	183	196	Right-handed alpha
Helix 75	AI3	D	200	209	Right-handed alpha
Helix 76	AI4	D	216	224	Right-handed alpha
Helix 77	AI5	D	231	241	Right-handed alpha
Helix 78	AI6	D	242	341	Right-handed alpha
Helix 79	AI7	D	692	741	Right-handed alpha
Helix 80	AI8	D	748	757	Right-handed alpha
Helix 81	AI9	D	761	763	Right-handed 310
Helix 82	AJ1	D	764	808	Right-handed alpha
Helix 83	AJ2	D	820	835	Right-handed alpha
Helix 84	AJ3	D	835	848	Right-handed alpha
Helix 85	AJ4	D	852	882	Right-handed alpha
Helix 86	AJ5	D	903	918	Right-handed alpha
Helix 87	AJ6	D	928	944	Right-handed alpha
Helix 88	AJ7	D	947	955	Right-handed alpha
Helix 89	AJ8	D	956	958	Right-handed 310
Helix 90	AJ9	D	985	1005	Right-handed alpha
Helix 91	AK1	D	1028	1042	Right-handed alpha
Helix 92	AK2	D	1054	1061	Right-handed alpha
Helix 93	AK3	F	49	63	Right-handed alpha
Helix 94	AK4	F	70	79	Right-handed alpha
Helix 95	AK5	F	80	89	Right-handed alpha
Helix 96	AK6	G	49	63	Right-handed alpha
Helix 97	AK7	G	70	79	Right-handed alpha
Helix 98	AK8	G	80	89	Right-handed alpha
Helix 99	AK9	G	130	150	Right-handed alpha
Helix 100	AL1	G	162	174	Right-handed alpha
Helix 101	AL2	G	178	195	Right-handed alpha
Helix 102	AL3	G	212	218	Right-handed alpha
Helix 103	AL4	G	219	235	Right-handed alpha
Helix 104	AL5	H	49	63	Right-handed alpha
Helix 105	AL6	H	70	79	Right-handed alpha
Helix 106	AL7	H	80	89	Right-handed alpha
Helix 107	AL8	H	130	150	Right-handed alpha
Helix 108	AL9	H	162	174	Right-handed alpha
Helix 109	AM1	H	178	196	Right-handed alpha
Helix 110	AM2	H	211	215	Right-handed 310
Helix 111	AM3	H	219	236	Right-handed alpha
Helix 112	AM4	I	49	63	Right-handed alpha
Helix 113	AM5	I	70	79	Right-handed alpha
Helix 114	AM6	I	80	89	Right-handed alpha
Helix 115	AM7	I	130	150	Right-handed alpha
Helix 116	AM8	I	162	174	Right-handed alpha
Helix 117	AM9	I	178	195	Right-handed alpha
Helix 118	AN1	I	212	218	Right-handed alpha
Helix 119	AN2	I	219	235	Right-handed alpha

There are 16 sheets in PDB entry 8DK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	101	103	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	472	first strand
Strand 2	A	475	485	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	101	103	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	14	21	anti-parallel
Strand 3	C	107	116	anti-parallel
Strand 4	C	119	128	anti-parallel
Strand 5	C	140	146	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1018	1021	first strand
Strand 2	C	1046	1049	parallel
Strand 3	C	39	42	parallel
Strand 4	C	1064	1069	parallel
Strand 5	C	1076	1081	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	890	898	first strand
Strand 2	C	960	968	anti-parallel
Strand 3	C	974	978	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	14	21	anti-parallel
Strand 3	D	107	115	anti-parallel
Strand 4	D	120	128	anti-parallel
Strand 5	D	140	146	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1017	1019	first strand
Strand 2	D	1045	1050	parallel
Strand 3	D	39	42	parallel
Strand 4	D	1064	1071	parallel
Strand 5	D	1074	1081	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	890	898	first strand
Strand 2	D	960	968	anti-parallel
Strand 3	D	973	978	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	103	107	anti-parallel
Strand 3	F	94	98	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	103	108	anti-parallel
Strand 3	G	93	98	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	207	210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	66	first strand
Strand 2	H	103	107	anti-parallel
Strand 3	H	94	98	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	207	210	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	66	first strand
Strand 2	I	103	108	anti-parallel
Strand 3	I	93	98	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	161	first strand
Strand 2	I	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK2