Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DK3 entry

There are 5 chains in PDB entry 8DK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10HIS 1088
B
 SER 10GLU 1083
C
 ALA 404TRP 497
P
 T 3 T 28
Q
 A 6 A 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8DK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
79 86Right-handed alpha
Helix 4
AA4
A
152 162Right-handed alpha
Helix 5
AA5
A
164 175Right-handed alpha
Helix 6
AA6
A
183 196Right-handed alpha
Helix 7
AA7
A
200 208Right-handed alpha
Helix 8
AA8
A
216 224Right-handed alpha
Helix 9
AA9
A
231 241Right-handed alpha
Helix 10
AB1
A
857 881Right-handed alpha
Helix 11
AB2
A
902 915Right-handed alpha
Helix 12
AB3
A
931 944Right-handed alpha
Helix 13
AB4
A
947 955Right-handed alpha
Helix 14
AB5
A
956 958Right-handed 310
Helix 15
AB6
A
985 1005Right-handed alpha
Helix 16
AB7
A
1006 1010Right-handed 310
Helix 17
AB8
A
1028 1043Right-handed alpha
Helix 18
AB9
A
1055 1062Right-handed alpha
Helix 19
AC1
A
1082 1088Right-handed alpha
Helix 20
AC2
B
48 59Right-handed alpha
Helix 21
AC3
B
68 72Right-handed 310
Helix 22
AC4
B
79 86Right-handed alpha
Helix 23
AC5
B
135 139Right-handed 310
Helix 24
AC6
B
152 163Right-handed alpha
Helix 25
AC7
B
164 170Right-handed alpha
Helix 26
AC8
B
183 196Right-handed alpha
Helix 27
AC9
B
200 208Right-handed alpha
Helix 28
AD1
B
216 224Right-handed alpha
Helix 29
AD2
B
231 241Right-handed alpha
Helix 30
AD3
B
858 882Right-handed alpha
Helix 31
AD4
B
901 918Right-handed alpha
Helix 32
AD5
B
930 944Right-handed alpha
Helix 33
AD6
B
947 955Right-handed alpha
Helix 34
AD7
B
956 958Right-handed 310
Helix 35
AD8
B
985 1005Right-handed alpha
Helix 36
AD9
B
1028 1043Right-handed alpha
Helix 37
AE1
B
1054 1062Right-handed alpha
Helix 38
AE2
C
409 425Right-handed alpha
Helix 39
AE3
C
429 437Right-handed alpha
Helix 40
AE4
C
445 457Right-handed alpha
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There are 7 sheets in PDB entry 8DK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
107 116anti-parallel
Strand 4
A
119 128anti-parallel
Strand 5
A
140 146anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1021first strand
Strand 2
A
1046 1049parallel
Strand 3
A
39 42parallel
Strand 4
A
1064 1071parallel
Strand 5
A
1074 1081anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 898first strand
Strand 2
A
960 968anti-parallel
Strand 3
A
974 978anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 33first strand
Strand 2
B
14 23anti-parallel
Strand 3
B
107 115anti-parallel
Strand 4
B
120 128anti-parallel
Strand 5
B
140 146anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1017 1019first strand
Strand 2
B
1045 1050parallel
Strand 3
B
40 42parallel
Strand 4
B
1065 1071parallel
Strand 5
B
1074 1080anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
890 898first strand
Strand 2
B
960 968anti-parallel
Strand 3
B
973 978anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 472first strand
Strand 2
C
475 485anti-parallel
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