Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DK9 entry

There are 8 chains in PDB entry 8DK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	PRO 396
B	THR 9	PRO 396
E	GLN 2	ALA 7
F	GLN 2	ALA 7
C	THR 9	PRO 396
D	THR 9	PRO 396
G	GLN 2	ALA 7
H	GLN 2	ALA 7

There are 46 helices in PDB entry 8DK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	28	Right-handed alpha
Helix 2	AA2	A	37	40	Right-handed 310
Helix 3	AA3	A	81	91	Right-handed alpha
Helix 4	AA4	A	139	151	Right-handed alpha
Helix 5	AA5	A	159	162	Right-handed 310
Helix 6	AA6	A	206	216	Right-handed alpha
Helix 7	AA7	A	228	232	Right-handed 310
Helix 8	AA8	A	275	286	Right-handed alpha
Helix 9	AA9	A	334	343	Right-handed alpha
Helix 10	AB1	A	367	373	Right-handed 310
Helix 11	AB2	B	16	30	Right-handed alpha
Helix 12	AB3	B	37	40	Right-handed 310
Helix 13	AB4	B	81	90	Right-handed alpha
Helix 14	AB5	B	120	124	Right-handed 310
Helix 15	AB6	B	139	151	Right-handed alpha
Helix 16	AB7	B	159	162	Right-handed 310
Helix 17	AB8	B	206	216	Right-handed alpha
Helix 18	AB9	B	228	232	Right-handed 310
Helix 19	AC1	B	275	286	Right-handed alpha
Helix 20	AC2	B	287	289	Right-handed 310
Helix 21	AC3	B	334	346	Right-handed alpha
Helix 22	AC4	B	367	373	Right-handed alpha
Helix 23	AC5	C	16	29	Right-handed alpha
Helix 24	AC6	C	37	40	Right-handed 310
Helix 25	AC7	C	81	89	Right-handed alpha
Helix 26	AC8	C	139	151	Right-handed alpha
Helix 27	AC9	C	159	162	Right-handed 310
Helix 28	AD1	C	206	217	Right-handed alpha
Helix 29	AD2	C	259	263	Right-handed 310
Helix 30	AD3	C	275	286	Right-handed alpha
Helix 31	AD4	C	287	289	Right-handed 310
Helix 32	AD5	C	334	346	Right-handed alpha
Helix 33	AD6	C	367	372	Right-handed alpha
Helix 34	AD7	D	16	30	Right-handed alpha
Helix 35	AD8	D	37	40	Right-handed 310
Helix 36	AD9	D	81	90	Right-handed alpha
Helix 37	AE1	D	139	151	Right-handed alpha
Helix 38	AE2	D	159	162	Right-handed 310
Helix 39	AE3	D	206	216	Right-handed alpha
Helix 40	AE4	D	217	219	Right-handed 310
Helix 41	AE5	D	228	232	Right-handed 310
Helix 42	AE6	D	258	263	Right-handed 310
Helix 43	AE7	D	275	286	Right-handed alpha
Helix 44	AE8	D	287	293	Right-handed 310
Helix 45	AE9	D	334	346	Right-handed alpha
Helix 46	AF1	D	367	373	Right-handed alpha

There are 19 sheets in PDB entry 8DK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	12	15	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	A	112	117	anti-parallel
Strand 6	B	314	321	anti-parallel
Strand 7	B	303	310	anti-parallel
Strand 8	B	295	300	anti-parallel
Strand 9	B	329	333	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	51	57	anti-parallel
Strand 4	A	61	68	anti-parallel
Strand 5	A	245	250	anti-parallel
Strand 6	A	237	242	anti-parallel
Strand 7	A	221	225	anti-parallel
Strand 8	A	135	138	anti-parallel
Strand 9	A	192	193	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	205	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	173	179	anti-parallel
Strand 4	A	183	190	anti-parallel
Strand 5	A	386	390	anti-parallel
Strand 6	A	361	365	anti-parallel
Strand 7	A	349	354	anti-parallel
Strand 8	A	269	274	anti-parallel
Strand 9	A	323	325	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	379	380	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	314	321	anti-parallel
Strand 5	B	112	117	anti-parallel
Strand 6	B	104	109	anti-parallel
Strand 7	B	96	101	anti-parallel
Strand 8	B	12	15	anti-parallel
Strand 9	B	70	73	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	42	47	anti-parallel
Strand 3	B	51	57	anti-parallel
Strand 4	B	61	68	anti-parallel
Strand 5	B	245	250	anti-parallel
Strand 6	B	237	241	anti-parallel
Strand 7	B	221	225	anti-parallel
Strand 8	B	133	138	anti-parallel
Strand 9	B	192	193	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	386	390	anti-parallel
Strand 6	B	361	365	anti-parallel
Strand 7	B	349	354	anti-parallel
Strand 8	B	269	274	anti-parallel
Strand 9	B	323	326	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	379	380	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	12	15	anti-parallel
Strand 3	C	96	101	anti-parallel
Strand 4	C	104	109	anti-parallel
Strand 5	C	112	117	anti-parallel
Strand 6	D	314	321	anti-parallel
Strand 7	D	303	310	anti-parallel
Strand 8	D	295	299	anti-parallel
Strand 9	D	329	333	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	80	first strand
Strand 2	C	42	47	anti-parallel
Strand 3	C	52	57	anti-parallel
Strand 4	C	61	67	anti-parallel
Strand 5	C	245	250	anti-parallel
Strand 6	C	237	242	anti-parallel
Strand 7	C	221	225	anti-parallel
Strand 8	C	135	138	anti-parallel
Strand 9	C	192	193	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	205	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	173	179	anti-parallel
Strand 4	C	183	190	anti-parallel
Strand 5	C	386	390	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	231	232	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	379	380	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	269	274	anti-parallel
Strand 3	C	349	354	anti-parallel
Strand 4	C	362	365	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	333	first strand
Strand 2	C	295	300	anti-parallel
Strand 3	C	303	310	anti-parallel
Strand 4	C	314	321	anti-parallel
Strand 5	D	112	117	anti-parallel
Strand 6	D	104	109	anti-parallel
Strand 7	D	96	101	anti-parallel
Strand 8	D	12	15	anti-parallel
Strand 9	D	70	73	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	51	57	anti-parallel
Strand 4	D	61	68	anti-parallel
Strand 5	D	245	250	anti-parallel
Strand 6	D	237	242	anti-parallel
Strand 7	D	221	225	anti-parallel
Strand 8	D	135	138	anti-parallel
Strand 9	D	192	193	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	164	170	anti-parallel
Strand 3	D	173	179	anti-parallel
Strand 4	D	183	190	anti-parallel
Strand 5	D	386	390	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	379	380	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	269	274	anti-parallel
Strand 3	D	349	354	anti-parallel
Strand 4	D	362	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DK9