Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DKC entry

There are 5 chains in PDB entry 8DKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	ILE 235
B	ALA 5	ILE 235
C	THR 2	ASP 1269
D	LYS 10	MET 1402
E	VAL 8	ASP 110

There are 96 helices in PDB entry 8DKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	48	Right-handed alpha
Helix 2	AA2	A	75	84	Right-handed alpha
Helix 3	AA3	A	155	161	Right-handed 310
Helix 4	AA4	A	209	230	Right-handed alpha
Helix 5	AA5	B	32	46	Right-handed alpha
Helix 6	AA6	B	75	84	Right-handed alpha
Helix 7	AA7	B	156	161	Right-handed 310
Helix 8	AA8	B	209	231	Right-handed alpha
Helix 9	AA9	C	25	36	Right-handed alpha
Helix 10	AB1	C	49	58	Right-handed alpha
Helix 11	AB2	C	82	90	Right-handed alpha
Helix 12	AB3	C	200	209	Right-handed alpha
Helix 13	AB4	C	212	221	Right-handed alpha
Helix 14	AB5	C	307	314	Right-handed alpha
Helix 15	AB6	C	319	330	Right-handed alpha
Helix 16	AB7	C	338	352	Right-handed alpha
Helix 17	AB8	C	359	370	Right-handed alpha
Helix 18	AB9	C	382	398	Right-handed alpha
Helix 19	AC1	C	408	410	Right-handed 310
Helix 20	AC2	C	416	442	Right-handed alpha
Helix 21	AC3	C	449	454	Right-handed alpha
Helix 22	AC4	C	456	470	Right-handed alpha
Helix 23	AC5	C	480	488	Right-handed alpha
Helix 24	AC6	C	506	510	Right-handed 310
Helix 25	AC7	C	572	576	Right-handed alpha
Helix 26	AC8	C	639	651	Right-handed alpha
Helix 27	AC9	C	670	676	Right-handed alpha
Helix 28	AD1	C	702	706	Right-handed 310
Helix 29	AD2	C	787	792	Right-handed alpha
Helix 30	AD3	C	825	831	Right-handed alpha
Helix 31	AD4	C	864	872	Right-handed alpha
Helix 32	AD5	C	913	942	Right-handed alpha
Helix 33	AD6	C	954	964	Right-handed alpha
Helix 34	AD7	C	977	982	Right-handed alpha
Helix 35	AD8	C	988	1019	Right-handed alpha
Helix 36	AD9	C	1083	1086	Right-handed 310
Helix 37	AE1	C	1092	1105	Right-handed alpha
Helix 38	AE2	C	1120	1131	Right-handed alpha
Helix 39	AE3	C	1167	1171	Right-handed 310
Helix 40	AE4	C	1200	1210	Right-handed alpha
Helix 41	AE5	C	1214	1222	Right-handed alpha
Helix 42	AE6	C	1226	1240	Right-handed alpha
Helix 43	AE7	C	1249	1260	Right-handed alpha
Helix 44	AE8	D	54	59	Right-handed alpha
Helix 45	AE9	D	73	77	Right-handed 310
Helix 46	AF1	D	90	96	Right-handed 310
Helix 47	AF2	D	109	115	Right-handed alpha
Helix 48	AF3	D	118	125	Right-handed alpha
Helix 49	AF4	D	127	136	Right-handed alpha
Helix 50	AF5	D	160	170	Right-handed alpha
Helix 51	AF6	D	192	202	Right-handed alpha
Helix 52	AF7	D	205	219	Right-handed alpha
Helix 53	AF8	D	222	241	Right-handed alpha
Helix 54	AF9	D	246	251	Right-handed 310
Helix 55	AG1	D	259	263	Right-handed 310
Helix 56	AG2	D	276	297	Right-handed alpha
Helix 57	AG3	D	301	321	Right-handed alpha
Helix 58	AG4	D	339	345	Right-handed alpha
Helix 59	AG5	D	382	390	Right-handed alpha
Helix 60	AG6	D	390	402	Right-handed alpha
Helix 61	AG7	D	406	416	Right-handed alpha
Helix 62	AG8	D	422	429	Right-handed alpha
Helix 63	AG9	D	443	445	Right-handed 310
Helix 64	AH1	D	466	471	Right-handed alpha
Helix 65	AH2	D	486	497	Right-handed alpha
Helix 66	AH3	D	498	502	Right-handed 310
Helix 67	AH4	D	516	527	Right-handed alpha
Helix 68	AH5	D	542	552	Right-handed alpha
Helix 69	AH6	D	583	589	Right-handed alpha
Helix 70	AH7	D	604	619	Right-handed alpha
Helix 71	AH8	D	619	642	Right-handed alpha
Helix 72	AH9	D	646	650	Right-handed 310
Helix 73	AI1	D	653	676	Right-handed alpha
Helix 74	AI2	D	680	710	Right-handed alpha
Helix 75	AI3	D	715	723	Right-handed alpha
Helix 76	AI4	D	728	737	Right-handed alpha
Helix 77	AI5	D	769	803	Right-handed alpha
Helix 78	AI6	D	835	841	Right-handed alpha
Helix 79	AI7	D	866	876	Right-handed alpha
Helix 80	AI8	D	896	901	Right-handed alpha
Helix 81	AI9	D	916	926	Right-handed alpha
Helix 82	AJ1	D	927	930	Right-handed 310
Helix 83	AJ2	D	1127	1136	Right-handed alpha
Helix 84	AJ3	D	1205	1214	Right-handed alpha
Helix 85	AJ4	D	1214	1233	Right-handed alpha
Helix 86	AJ5	D	1238	1250	Right-handed alpha
Helix 87	AJ6	D	1268	1276	Right-handed 310
Helix 88	AJ7	D	1338	1345	Right-handed alpha
Helix 89	AJ8	D	1348	1354	Right-handed alpha
Helix 90	AJ9	D	1357	1369	Right-handed alpha
Helix 91	AK1	D	1376	1384	Right-handed alpha
Helix 92	AK2	D	1389	1393	Right-handed 310
Helix 93	AK3	E	19	24	Right-handed alpha
Helix 94	AK4	E	26	57	Right-handed alpha
Helix 95	AK5	E	70	81	Right-handed alpha
Helix 96	AK6	E	84	96	Right-handed alpha

There are 37 sheets in PDB entry 8DKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	192	204	anti-parallel
Strand 4	A	177	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	104	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	50	57	anti-parallel
Strand 4	A	168	169	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	122	124	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	130	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	172	173	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	21	29	anti-parallel
Strand 3	B	192	204	anti-parallel
Strand 4	B	177	189	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	98	104	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	56	59	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	122	124	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	130	134	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	172	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	1111	1112	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	67	76	anti-parallel
Strand 3	C	94	106	anti-parallel
Strand 4	C	112	126	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	473	475	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	491	492	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	412	413	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	160	first strand
Strand 2	C	163	172	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	189	193	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	548	556	anti-parallel
Strand 3	C	567	571	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	560	first strand
Strand 2	C	548	556	anti-parallel
Strand 3	C	616	618	anti-parallel
Strand 4	C	580	581	parallel
Strand 5	C	598	601	anti-parallel
Strand 6	C	608	609	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	695	700	anti-parallel
Strand 3	C	686	691	anti-parallel
Strand 4	C	743	744	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	736	first strand
Strand 2	C	751	752	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	757	first strand
Strand 2	C	760	761	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1138	1139	first strand
Strand 2	C	1154	1163	anti-parallel
Strand 3	C	1048	1051	anti-parallel
Strand 4	C	1057	1063	anti-parallel
Strand 5	C	783	786	parallel
Strand 6	C	1079	1081	anti-parallel
Strand 7	C	765	771	parallel
Strand 8	C	1154	1163	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	813	814	first strand
Strand 2	C	797	810	anti-parallel
Strand 3	C	1029	1041	anti-parallel
Strand 4	C	893	895	anti-parallel
Strand 5	C	843	844	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	851	first strand
Strand 2	C	885	886	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	855	first strand
Strand 2	C	881	882	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1173	1175	first strand
Strand 2	D	363	365	anti-parallel
Strand 3	D	480	482	anti-parallel
Strand 4	D	434	437	anti-parallel
Strand 5	D	447	454	anti-parallel
Strand 6	D	378	381	parallel
Strand 7	D	460	462	anti-parallel
Strand 8	D	368	370	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	1371	1372	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	98	102	parallel
Strand 3	D	254	257	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	189	190	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	272	274	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	569	first strand
Strand 2	D	572	580	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	823	first strand
Strand 2	D	881	883	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	826	828	first strand
Strand 2	D	831	834	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1151	1152	first strand
Strand 2	D	1192	1193	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1163	first strand
Strand 2	D	1179	1180	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1253	1258	first strand
Strand 2	D	1330	1334	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKC