Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DKD entry

There is 1 chain in PDB entry 8DKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8DKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
37 40Right-handed 310
Helix 3
AA3
A
81 91Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
139 151Right-handed alpha
Helix 6
AA6
A
206 216Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
259 263Right-handed 310
Helix 9
AA9
A
275 289Right-handed alpha
Helix 10
AB1
A
334 345Right-handed alpha
Helix 11
AB2
A
367 372Right-handed alpha
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There are 5 sheets in PDB entry 8DKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
96 99anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
112 117anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
61 68anti-parallel
Strand 5
A
245 250anti-parallel
Strand 6
A
237 242anti-parallel
Strand 7
A
221 225anti-parallel
Strand 8
A
133 138anti-parallel
Strand 9
A
192 193anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
183 190anti-parallel
Strand 5
A
386 390anti-parallel
Strand 6
A
361 365anti-parallel
Strand 7
A
349 354anti-parallel
Strand 8
A
269 274anti-parallel
Strand 9
A
323 325anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
379 380anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 321first strand
Strand 2
A
303 310anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
329 333anti-parallel
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