Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DKO entry

There are 2 chains in PDB entry 8DKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28MET 524
B
 SER 25VAL 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8DKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
57 78Right-handed alpha
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
200 207Right-handed alpha
Helix 6
AA6
A
208 215Right-handed alpha
Helix 7
AA7
A
229 252Right-handed alpha
Helix 8
AA8
A
254 259Right-handed alpha
Helix 9
AA9
A
265 269Right-handed 310
Helix 10
AB1
A
277 300Right-handed alpha
Helix 11
AB2
A
309 311Right-handed 310
Helix 12
AB3
A
312 325Right-handed alpha
Helix 13
AB4
A
326 330Right-handed 310
Helix 14
AB5
A
345 361Right-handed alpha
Helix 15
AB6
A
373 384Right-handed alpha
Helix 16
AB7
A
394 411Right-handed alpha
Helix 17
AB8
A
424 435Right-handed alpha
Helix 18
AB9
A
453 458Right-handed alpha
Helix 19
AC1
A
478 495Right-handed alpha
Helix 20
AC2
A
498 503Right-handed alpha
Helix 21
AC3
A
509 514Right-handed alpha
Helix 22
AC4
A
516 524Right-handed alpha
Helix 23
AC5
B
28 39Right-handed alpha
Helix 24
AC6
B
42 55Right-handed alpha
Helix 25
AC7
B
57 78Right-handed alpha
Helix 26
AC8
B
192 196Right-handed 310
Helix 27
AC9
B
200 208Right-handed alpha
Helix 28
AD1
B
208 214Right-handed alpha
Helix 29
AD2
B
229 252Right-handed alpha
Helix 30
AD3
B
254 259Right-handed alpha
Helix 31
AD4
B
265 269Right-handed 310
Helix 32
AD5
B
277 300Right-handed alpha
Helix 33
AD6
B
309 311Right-handed 310
Helix 34
AD7
B
312 325Right-handed alpha
Helix 35
AD8
B
326 330Right-handed 310
Helix 36
AD9
B
345 361Right-handed alpha
Helix 37
AE1
B
373 384Right-handed alpha
Helix 38
AE2
B
394 411Right-handed alpha
Helix 39
AE3
B
424 435Right-handed alpha
Helix 40
AE4
B
453 458Right-handed alpha
Helix 41
AE5
B
478 495Right-handed alpha
Helix 42
AE6
B
498 503Right-handed alpha
Helix 43
AE7
B
509 514Right-handed alpha
Helix 44
AE8
B
516 524Right-handed alpha
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There are 2 sheets in PDB entry 8DKO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
261 264parallel
Strand 3
A
302 305parallel
Strand 4
A
335 340parallel
Strand 5
A
364 369parallel
Strand 6
A
416 421parallel
Strand 7
A
445 449parallel
Strand 8
A
470 476parallel
Strand 9
A
216 222parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 222first strand
Strand 2
B
261 264parallel
Strand 3
B
302 305parallel
Strand 4
B
335 340parallel
Strand 5
B
364 369parallel
Strand 6
B
416 421parallel
Strand 7
B
445 449parallel
Strand 8
B
470 476parallel
Strand 9
B
216 222parallel
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