Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DKT entry

There are 2 chains in PDB entry 8DKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 34LYS 304
B
 GLY 41GLY 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8DKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 57Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
113 133Right-handed alpha
Helix 4
AA4
A
159 167Right-handed alpha
Helix 5
AA5
A
181 185Right-handed 310
Helix 6
AA6
A
186 205Right-handed alpha
Helix 7
AA7
A
219 233Right-handed alpha
Helix 8
AA8
A
270 281Right-handed alpha
Helix 9
AA9
A
281 292Right-handed alpha
Helix 10
AB1
A
292 303Right-handed alpha
Helix 11
AB2
B
55 65Right-handed alpha
Helix 12
AB3
B
116 136Right-handed alpha
Helix 13
AB4
B
164 175Right-handed alpha
Helix 14
AB5
B
186 190Right-handed 310
Helix 15
AB6
B
191 209Right-handed alpha
Helix 16
AB7
B
223 233Right-handed alpha
Helix 17
AB8
B
271 276Right-handed alpha
Helix 18
AB9
B
277 279Right-handed 310
Helix 19
AC1
B
280 294Right-handed alpha
Helix 20
AC2
B
294 307Right-handed alpha
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There are 4 sheets in PDB entry 8DKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 88first strand
Strand 2
A
91 99anti-parallel
Strand 3
A
36 41parallel
Strand 4
A
146 151parallel
Strand 5
A
175 179parallel
Strand 6
A
235 236parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
259 262anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 89first strand
Strand 2
B
96 104anti-parallel
Strand 3
B
42 49parallel
Strand 4
B
151 156parallel
Strand 5
B
179 184parallel
Strand 6
B
236 237parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il