Analysis of interatomic Contacts of Structural Units in PDB entry:
8DKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DKV entry

There are 2 chains in PDB entry 8DKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 234TYR 505
C
 SER 1MET 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8DKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
234 254Right-handed alpha
Helix 2
AA2
A
257 267Right-handed alpha
Helix 3
AA3
A
279 286Right-handed alpha
Helix 4
AA4
A
301 303Right-handed 310
Helix 5
AA5
A
304 317Right-handed alpha
Helix 6
AA6
A
317 330Right-handed alpha
Helix 7
AA7
A
338 361Right-handed alpha
Helix 8
AA8
A
378 384Right-handed alpha
Helix 9
AA9
A
387 391Right-handed 310
Helix 10
AB1
A
392 404Right-handed alpha
Helix 11
AB2
A
408 421Right-handed alpha
Helix 12
AB3
A
431 453Right-handed alpha
Helix 13
AB4
A
458 485Right-handed alpha
Helix 14
AB5
A
494 502Right-handed alpha
Helix 15
AB6
C
4 14Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8DKV.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
374 377parallel
Strand 3
A
366 369anti-parallel
Strand 4
A
362 363anti-parallel
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