Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DL0 entry

There are 4 chains in PDB entry 8DL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2PRO 395
B
 ASN 2PHE 255
C
 ILE 2PRO 395
D
 ASN 2HIS 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 8DL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
A
114 130Right-handed alpha
Helix 5
AA5
A
132 137Right-handed 310
Helix 6
AA6
A
138 142Right-handed 310
Helix 7
AA7
A
143 158Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
173 190Right-handed alpha
Helix 10
AB1
A
200 207Right-handed alpha
Helix 11
AB2
A
224 241Right-handed alpha
Helix 12
AB3
A
314 318Right-handed alpha
Helix 13
AB4
B
3 17Right-handed alpha
Helix 14
AB5
B
26 28Right-handed 310
Helix 15
AB6
B
29 43Right-handed alpha
Helix 16
AB7
B
56 88Right-handed alpha
Helix 17
AB8
B
88 93Right-handed alpha
Helix 18
AB9
B
100 129Right-handed alpha
Helix 19
AC1
B
132 138Right-handed 310
Helix 20
AC2
B
139 165Right-handed alpha
Helix 21
AC3
B
167 181Right-handed alpha
Helix 22
AC4
B
188 192Right-handed 310
Helix 23
AC5
B
193 201Right-handed alpha
Helix 24
AC6
B
204 217Right-handed alpha
Helix 25
AC7
B
223 254Right-handed alpha
Helix 26
AC8
C
18 26Right-handed alpha
Helix 27
AC9
C
59 69Right-handed alpha
Helix 28
AD1
C
87 92Right-handed alpha
Helix 29
AD2
C
99 111Right-handed alpha
Helix 30
AD3
C
114 130Right-handed alpha
Helix 31
AD4
C
133 137Right-handed 310
Helix 32
AD5
C
138 142Right-handed 310
Helix 33
AD6
C
143 157Right-handed alpha
Helix 34
AD7
C
173 189Right-handed alpha
Helix 35
AD8
C
200 208Right-handed alpha
Helix 36
AD9
C
224 237Right-handed alpha
Helix 37
AE1
C
315 318Right-handed 310
Helix 38
AE2
D
3 16Right-handed alpha
Helix 39
AE3
D
26 28Right-handed 310
Helix 40
AE4
D
29 43Right-handed alpha
Helix 41
AE5
D
54 84Right-handed alpha
Helix 42
AE6
D
84 93Right-handed alpha
Helix 43
AE7
D
100 129Right-handed alpha
Helix 44
AE8
D
132 139Right-handed 310
Helix 45
AE9
D
140 164Right-handed alpha
Helix 46
AF1
D
167 183Right-handed alpha
Helix 47
AF2
D
188 192Right-handed 310
Helix 48
AF3
D
193 202Right-handed alpha
Helix 49
AF4
D
204 218Right-handed alpha
Helix 50
AF5
D
223 255Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8DL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 43first strand
Strand 2
A
3 13anti-parallel
Strand 3
A
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
162 165parallel
Strand 3
A
193 197parallel
Strand 4
A
49 53parallel
Strand 5
A
210 215parallel
Strand 6
A
218 223anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 265first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
326 335anti-parallel
Strand 4
C
389 394anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
358 374parallel
Strand 3
A
341 351anti-parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
308 313anti-parallel
Strand 6
C
380 381anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 394first strand
Strand 2
C
326 335anti-parallel
Strand 3
C
279 288anti-parallel
Strand 4
C
257 265anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 43first strand
Strand 2
C
3 13anti-parallel
Strand 3
C
75 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 85first strand
Strand 2
C
162 165parallel
Strand 3
C
193 197parallel
Strand 4
C
49 53parallel
Strand 5
C
210 215parallel
Strand 6
C
218 223anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 276first strand
Strand 2
C
358 374parallel
Strand 3
C
341 351anti-parallel
Strand 4
C
295 302anti-parallel
Strand 5
C
308 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il