Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DL1 entry

There are 4 chains in PDB entry 8DL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 45	GLU 758
B	LEU 46	GLU 758
C	GLN 44	ALA 757
D	VAL 45	ALA 757

There are 99 helices in PDB entry 8DL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	104	Right-handed 310
Helix 2	AA2	A	122	128	Right-handed alpha
Helix 3	AA3	A	160	164	Right-handed 310
Helix 4	AA4	A	216	218	Right-handed 310
Helix 5	AA5	A	222	226	Right-handed 310
Helix 6	AA6	A	321	326	Right-handed alpha
Helix 7	AA7	A	330	336	Right-handed alpha
Helix 8	AA8	A	337	345	Right-handed alpha
Helix 9	AA9	A	379	393	Right-handed alpha
Helix 10	AB1	A	410	416	Right-handed alpha
Helix 11	AB2	A	451	470	Right-handed alpha
Helix 12	AB3	A	478	482	Right-handed 310
Helix 13	AB4	A	490	495	Right-handed alpha
Helix 14	AB5	A	497	515	Right-handed alpha
Helix 15	AB6	A	526	536	Right-handed alpha
Helix 16	AB7	A	544	554	Right-handed alpha
Helix 17	AB8	A	561	565	Right-handed 310
Helix 18	AB9	A	569	571	Right-handed 310
Helix 19	AC1	A	584	593	Right-handed alpha
Helix 20	AC2	A	594	599	Right-handed 310
Helix 21	AC3	A	600	614	Right-handed alpha
Helix 22	AC4	A	627	631	Right-handed 310
Helix 23	AC5	A	650	655	Right-handed alpha
Helix 24	AC6	A	655	672	Right-handed alpha
Helix 25	AC7	A	673	677	Right-handed 310
Helix 26	AC8	B	102	104	Right-handed 310
Helix 27	AC9	B	122	127	Right-handed alpha
Helix 28	AD1	B	160	164	Right-handed 310
Helix 29	AD2	B	222	226	Right-handed 310
Helix 30	AD3	B	321	326	Right-handed alpha
Helix 31	AD4	B	330	336	Right-handed alpha
Helix 32	AD5	B	337	345	Right-handed alpha
Helix 33	AD6	B	379	393	Right-handed alpha
Helix 34	AD7	B	410	416	Right-handed alpha
Helix 35	AD8	B	451	470	Right-handed alpha
Helix 36	AD9	B	478	482	Right-handed 310
Helix 37	AE1	B	490	495	Right-handed alpha
Helix 38	AE2	B	497	515	Right-handed alpha
Helix 39	AE3	B	526	535	Right-handed alpha
Helix 40	AE4	B	544	554	Right-handed alpha
Helix 41	AE5	B	561	565	Right-handed 310
Helix 42	AE6	B	569	571	Right-handed 310
Helix 43	AE7	B	584	593	Right-handed alpha
Helix 44	AE8	B	594	599	Right-handed 310
Helix 45	AE9	B	600	614	Right-handed alpha
Helix 46	AF1	B	627	631	Right-handed 310
Helix 47	AF2	B	650	655	Right-handed alpha
Helix 48	AF3	B	655	672	Right-handed alpha
Helix 49	AF4	B	673	677	Right-handed 310
Helix 50	AF5	C	102	104	Right-handed 310
Helix 51	AF6	C	122	128	Right-handed alpha
Helix 52	AF7	C	160	164	Right-handed 310
Helix 53	AF8	C	216	218	Right-handed 310
Helix 54	AF9	C	222	226	Right-handed 310
Helix 55	AG1	C	321	326	Right-handed alpha
Helix 56	AG2	C	330	336	Right-handed alpha
Helix 57	AG3	C	337	345	Right-handed alpha
Helix 58	AG4	C	379	393	Right-handed alpha
Helix 59	AG5	C	410	416	Right-handed alpha
Helix 60	AG6	C	451	470	Right-handed alpha
Helix 61	AG7	C	478	482	Right-handed 310
Helix 62	AG8	C	490	495	Right-handed alpha
Helix 63	AG9	C	497	515	Right-handed alpha
Helix 64	AH1	C	526	535	Right-handed alpha
Helix 65	AH2	C	544	554	Right-handed alpha
Helix 66	AH3	C	560	565	Right-handed 310
Helix 67	AH4	C	569	571	Right-handed 310
Helix 68	AH5	C	584	593	Right-handed alpha
Helix 69	AH6	C	594	598	Right-handed 310
Helix 70	AH7	C	600	614	Right-handed alpha
Helix 71	AH8	C	627	631	Right-handed 310
Helix 72	AH9	C	650	655	Right-handed alpha
Helix 73	AI1	C	655	672	Right-handed alpha
Helix 74	AI2	C	673	677	Right-handed 310
Helix 75	AI3	C	730	734	Right-handed alpha
Helix 76	AI4	D	102	104	Right-handed 310
Helix 77	AI5	D	122	127	Right-handed alpha
Helix 78	AI6	D	216	218	Right-handed 310
Helix 79	AI7	D	222	226	Right-handed 310
Helix 80	AI8	D	321	326	Right-handed alpha
Helix 81	AI9	D	330	336	Right-handed alpha
Helix 82	AJ1	D	337	345	Right-handed alpha
Helix 83	AJ2	D	379	393	Right-handed alpha
Helix 84	AJ3	D	410	416	Right-handed alpha
Helix 85	AJ4	D	451	470	Right-handed alpha
Helix 86	AJ5	D	478	482	Right-handed 310
Helix 87	AJ6	D	489	495	Right-handed alpha
Helix 88	AJ7	D	497	515	Right-handed alpha
Helix 89	AJ8	D	526	535	Right-handed alpha
Helix 90	AJ9	D	544	554	Right-handed alpha
Helix 91	AK1	D	561	565	Right-handed 310
Helix 92	AK2	D	569	571	Right-handed 310
Helix 93	AK3	D	584	593	Right-handed alpha
Helix 94	AK4	D	594	598	Right-handed 310
Helix 95	AK5	D	600	614	Right-handed alpha
Helix 96	AK6	D	627	631	Right-handed 310
Helix 97	AK7	D	650	655	Right-handed alpha
Helix 98	AK8	D	655	672	Right-handed alpha
Helix 99	AK9	D	673	677	Right-handed 310

There are 37 sheets in PDB entry 8DL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	114	119	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	82	88	anti-parallel
Strand 6	A	137	143	anti-parallel
Strand 7	A	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	192	198	anti-parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	289	294	anti-parallel
Strand 4	A	272	274	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	320	first strand
Strand 2	A	348	351	parallel
Strand 3	A	396	401	parallel
Strand 4	A	473	476	parallel
Strand 5	A	519	522	parallel
Strand 6	A	539	543	parallel
Strand 7	A	573	576	parallel
Strand 8	A	622	625	parallel
Strand 9	A	316	320	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	367	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	685	first strand
Strand 2	A	695	700	anti-parallel
Strand 3	A	706	711	anti-parallel
Strand 4	A	750	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	721	first strand
Strand 2	A	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	729	first strand
Strand 2	A	735	738	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	114	119	anti-parallel
Strand 4	B	106	111	anti-parallel
Strand 5	B	82	88	anti-parallel
Strand 6	B	137	143	anti-parallel
Strand 7	B	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	289	293	anti-parallel
Strand 4	B	272	274	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	348	351	parallel
Strand 3	B	396	401	parallel
Strand 4	B	473	476	parallel
Strand 5	B	519	522	parallel
Strand 6	B	539	543	parallel
Strand 7	B	573	576	parallel
Strand 8	B	622	625	parallel
Strand 9	B	316	320	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	685	first strand
Strand 2	B	695	700	anti-parallel
Strand 3	B	706	711	anti-parallel
Strand 4	B	750	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	721	first strand
Strand 2	B	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	736	738	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	114	119	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	82	88	anti-parallel
Strand 6	C	137	143	anti-parallel
Strand 7	C	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	235	240	anti-parallel
Strand 4	C	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	247	256	anti-parallel
Strand 3	C	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	247	256	anti-parallel
Strand 3	C	289	294	anti-parallel
Strand 4	C	272	274	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	320	first strand
Strand 2	C	348	351	parallel
Strand 3	C	396	401	parallel
Strand 4	C	473	476	parallel
Strand 5	C	519	522	parallel
Strand 6	C	539	543	parallel
Strand 7	C	573	576	parallel
Strand 8	C	622	625	parallel
Strand 9	C	316	320	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	685	first strand
Strand 2	C	695	700	anti-parallel
Strand 3	C	706	711	anti-parallel
Strand 4	C	750	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	721	first strand
Strand 2	C	742	745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	728	729	first strand
Strand 2	C	735	736	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	53	first strand
Strand 2	D	63	68	anti-parallel
Strand 3	D	114	119	anti-parallel
Strand 4	D	106	109	anti-parallel
Strand 5	D	82	88	anti-parallel
Strand 6	D	137	143	anti-parallel
Strand 7	D	155	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	192	198	anti-parallel
Strand 3	D	235	240	anti-parallel
Strand 4	D	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	214	first strand
Strand 2	D	247	256	anti-parallel
Strand 3	D	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	214	first strand
Strand 2	D	247	256	anti-parallel
Strand 3	D	289	294	anti-parallel
Strand 4	D	272	274	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	320	first strand
Strand 2	D	348	351	parallel
Strand 3	D	396	401	parallel
Strand 4	D	473	476	parallel
Strand 5	D	519	522	parallel
Strand 6	D	539	543	parallel
Strand 7	D	573	576	parallel
Strand 8	D	622	625	parallel
Strand 9	D	316	320	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	685	first strand
Strand 2	D	695	700	anti-parallel
Strand 3	D	706	711	anti-parallel
Strand 4	D	750	754	anti-parallel
Strand 5	D	728	729	anti-parallel
Strand 6	D	735	736	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	721	first strand
Strand 2	D	742	745	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL1