Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DL3 entry

There are 2 chains in PDB entry 8DL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3TYR 341
B
 GLY -2TYR 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8DL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
41 46Right-handed 310
Helix 4
AA4
A
47 52Right-handed alpha
Helix 5
AA5
A
61 74Right-handed alpha
Helix 6
AA6
A
98 113Right-handed alpha
Helix 7
AA7
A
118 123Right-handed alpha
Helix 8
AA8
A
126 134Right-handed alpha
Helix 9
AA9
A
144 163Right-handed alpha
Helix 10
AB1
A
166 174Right-handed alpha
Helix 11
AB2
A
177 189Right-handed alpha
Helix 12
AB3
A
190 193Right-handed 310
Helix 13
AB4
A
206 220Right-handed alpha
Helix 14
AB5
A
223 227Right-handed 310
Helix 15
AB6
A
230 234Right-handed 310
Helix 16
AB7
A
240 249Right-handed alpha
Helix 17
AB8
A
255 265Right-handed alpha
Helix 18
AB9
A
272 299Right-handed alpha
Helix 19
AC1
A
309 324Right-handed alpha
Helix 20
AC2
A
325 329Right-handed 310
Helix 21
AC3
B
6 16Right-handed alpha
Helix 22
AC4
B
24 38Right-handed alpha
Helix 23
AC5
B
41 45Right-handed 310
Helix 24
AC6
B
46 52Right-handed alpha
Helix 25
AC7
B
61 74Right-handed alpha
Helix 26
AC8
B
98 113Right-handed alpha
Helix 27
AC9
B
118 123Right-handed alpha
Helix 28
AD1
B
126 134Right-handed alpha
Helix 29
AD2
B
144 163Right-handed alpha
Helix 30
AD3
B
166 174Right-handed alpha
Helix 31
AD4
B
177 189Right-handed alpha
Helix 32
AD5
B
190 193Right-handed 310
Helix 33
AD6
B
206 220Right-handed alpha
Helix 34
AD7
B
223 227Right-handed 310
Helix 35
AD8
B
230 234Right-handed 310
Helix 36
AD9
B
240 249Right-handed alpha
Helix 37
AE1
B
255 265Right-handed alpha
Helix 38
AE2
B
272 301Right-handed alpha
Helix 39
AE3
B
309 324Right-handed alpha
Helix 40
AE4
B
325 329Right-handed 310
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There are 6 sheets in PDB entry 8DL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
252 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
94 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
201 204anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
252 254anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
94 97anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
201 204anti-parallel
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