Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DL5 entry

There are 4 chains in PDB entry 8DL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16HIS 235
A
 TRP 237THR 463
B
 THR 16HIS 235
B
 TRP 237GLY 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8DL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed 310
Helix 2
AA2
A
45 62Right-handed alpha
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
70 87Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
98 110Right-handed alpha
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
153 171Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
221 226Right-handed alpha
Helix 11
AB2
A
234 238Right-handed alpha
Helix 12
AB3
A
250 257Right-handed 310
Helix 13
AB4
A
277 282Right-handed 310
Helix 14
AB5
A
293 299Right-handed alpha
Helix 15
AB6
A
307 312Right-handed alpha
Helix 16
AB7
A
312 323Right-handed alpha
Helix 17
AB8
A
326 350Right-handed alpha
Helix 18
AB9
A
408 421Right-handed alpha
Helix 19
AC1
A
446 463Right-handed alpha
Helix 20
AC2
B
20 27Right-handed 310
Helix 21
AC3
B
37 41Right-handed 310
Helix 22
AC4
B
45 62Right-handed alpha
Helix 23
AC5
B
62 69Right-handed alpha
Helix 24
AC6
B
70 87Right-handed alpha
Helix 25
AC7
B
89 91Right-handed 310
Helix 26
AC8
B
98 110Right-handed alpha
Helix 27
AC9
B
125 137Right-handed alpha
Helix 28
AD1
B
153 171Right-handed alpha
Helix 29
AD2
B
192 203Right-handed alpha
Helix 30
AD3
B
221 226Right-handed alpha
Helix 31
AD4
B
234 238Right-handed alpha
Helix 32
AD5
B
250 257Right-handed 310
Helix 33
AD6
B
277 282Right-handed 310
Helix 34
AD7
B
294 301Right-handed alpha
Helix 35
AD8
B
307 312Right-handed alpha
Helix 36
AD9
B
312 323Right-handed alpha
Helix 37
AE1
B
326 350Right-handed alpha
Helix 38
AE2
B
406 421Right-handed alpha
Helix 39
AE3
B
446 465Right-handed alpha
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There are 4 sheets in PDB entry 8DL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
229 233anti-parallel
Strand 4
A
206 211parallel
Strand 5
A
174 181parallel
Strand 6
A
116 121parallel
Strand 7
A
142 146parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 384first strand
Strand 2
A
434 440anti-parallel
Strand 3
A
428 431anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
229 233anti-parallel
Strand 4
B
206 210parallel
Strand 5
B
174 181parallel
Strand 6
B
116 121parallel
Strand 7
B
142 146parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 384first strand
Strand 2
B
434 440anti-parallel
Strand 3
B
428 431anti-parallel
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