Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DL6 entry

There are 3 chains in PDB entry 8DL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15PRO 555
C
 ASP 21GLU 233
D
 GLU 20ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8DL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
24 55Right-handed alpha
Helix 3
AA3
A
58 85Right-handed alpha
Helix 4
AA4
A
87 116Right-handed alpha
Helix 5
AA5
A
116 124Right-handed alpha
Helix 6
AA6
A
126 163Right-handed alpha
Helix 7
AA7
A
166 197Right-handed alpha
Helix 8
AA8
A
200 228Right-handed alpha
Helix 9
AA9
A
229 234Right-handed 310
Helix 10
AB1
A
290 305Right-handed alpha
Helix 11
AB2
A
307 317Right-handed alpha
Helix 12
AB3
A
325 335Right-handed alpha
Helix 13
AB4
A
340 368Right-handed alpha
Helix 14
AB5
A
368 393Right-handed alpha
Helix 15
AB6
A
453 484Right-handed alpha
Helix 16
AB7
A
485 489Right-handed 310
Helix 17
AB8
A
490 514Right-handed alpha
Helix 18
AB9
A
516 544Right-handed alpha
Helix 19
AC1
C
141 147Right-handed alpha
Helix 20
AC2
C
202 208Right-handed alpha
Helix 21
AC3
D
47 51Right-handed 310
Helix 22
AC4
D
81 85Right-handed 310
Helix 23
AC5
D
106 110Right-handed 310
Helix 24
AC6
D
179 183Right-handed 310
Helix 25
AC7
D
209 213Right-handed 310
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There are 9 sheets in PDB entry 8DL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
38 45anti-parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
82 87anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
122 126parallel
Strand 3
C
105 110anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
C
65 69anti-parallel
Strand 6
C
73 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
150 159anti-parallel
Strand 3
C
193 201anti-parallel
Strand 4
C
179 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 170first strand
Strand 2
C
212 217anti-parallel
Strand 3
C
225 228anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
36 44anti-parallel
Strand 3
D
97 103anti-parallel
Strand 4
D
87 92anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 31first strand
Strand 2
D
133 137parallel
Strand 3
D
111 118anti-parallel
Strand 4
D
52 58anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
77 79anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 146first strand
Strand 2
D
163 170anti-parallel
Strand 3
D
199 206anti-parallel
Strand 4
D
188 190anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 146first strand
Strand 2
D
163 170anti-parallel
Strand 3
D
199 206anti-parallel
Strand 4
D
194 196anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
219 222first strand
Strand 2
D
231 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il