Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DL7 entry

There are 5 chains in PDB entry 8DL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ALA 557
C	ASP 21	GLU 233
D	GLU 20	ALA 238
F	THR 2	HIS 3
F	ARG 6	ARG 8

There are 24 helices in PDB entry 8DL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed alpha
Helix 2	AA2	A	23	54	Right-handed alpha
Helix 3	AA3	A	57	84	Right-handed alpha
Helix 4	AA4	A	87	116	Right-handed alpha
Helix 5	AA5	A	117	123	Right-handed alpha
Helix 6	AA6	A	126	164	Right-handed alpha
Helix 7	AA7	A	167	198	Right-handed alpha
Helix 8	AA8	A	200	230	Right-handed alpha
Helix 9	AA9	A	231	234	Right-handed 310
Helix 10	AB1	A	285	304	Right-handed alpha
Helix 11	AB2	A	307	317	Right-handed alpha
Helix 12	AB3	A	325	336	Right-handed alpha
Helix 13	AB4	A	339	367	Right-handed alpha
Helix 14	AB5	A	369	390	Right-handed alpha
Helix 15	AB6	A	452	483	Right-handed alpha
Helix 16	AB7	A	485	487	Right-handed 310
Helix 17	AB8	A	488	514	Right-handed alpha
Helix 18	AB9	A	519	547	Right-handed alpha
Helix 19	AC1	C	99	103	Right-handed 310
Helix 20	AC2	C	141	147	Right-handed alpha
Helix 21	AC3	C	202	208	Right-handed alpha
Helix 22	AC4	D	47	51	Right-handed 310
Helix 23	AC5	D	81	84	Right-handed 310
Helix 24	AC6	D	106	110	Right-handed 310

There are 10 sheets in PDB entry 8DL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	39	45	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	82	87	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	123	125	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	65	69	anti-parallel
Strand 3	C	53	58	anti-parallel
Strand 4	C	105	110	anti-parallel
Strand 5	C	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	150	159	anti-parallel
Strand 3	C	193	201	anti-parallel
Strand 4	C	179	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	212	218	anti-parallel
Strand 3	C	221	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	36	44	anti-parallel
Strand 3	D	97	103	anti-parallel
Strand 4	D	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	133	137	parallel
Strand 3	D	111	118	anti-parallel
Strand 4	D	52	58	anti-parallel
Strand 5	D	64	70	anti-parallel
Strand 6	D	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	163	170	anti-parallel
Strand 3	D	199	206	anti-parallel
Strand 4	D	188	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	163	170	anti-parallel
Strand 3	D	199	206	anti-parallel
Strand 4	D	194	196	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	179	first strand
Strand 2	D	218	224	anti-parallel
Strand 3	D	229	235	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL7