Analysis of interatomic Contacts of Structural Units in PDB entry:
8DL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DL8 entry

There are 3 chains in PDB entry 8DL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15ALA 557
C
 ASP 21GLU 233
D
 GLU 20ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8DL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
23 54Right-handed alpha
Helix 3
AA3
A
57 85Right-handed alpha
Helix 4
AA4
A
87 116Right-handed alpha
Helix 5
AA5
A
116 123Right-handed alpha
Helix 6
AA6
A
126 156Right-handed alpha
Helix 7
AA7
A
157 164Right-handed alpha
Helix 8
AA8
A
166 199Right-handed alpha
Helix 9
AA9
A
200 230Right-handed alpha
Helix 10
AB1
A
231 234Right-handed 310
Helix 11
AB2
A
285 305Right-handed alpha
Helix 12
AB3
A
307 317Right-handed alpha
Helix 13
AB4
A
326 335Right-handed alpha
Helix 14
AB5
A
338 367Right-handed alpha
Helix 15
AB6
A
368 392Right-handed alpha
Helix 16
AB7
A
452 483Right-handed alpha
Helix 17
AB8
A
488 514Right-handed alpha
Helix 18
AB9
A
519 547Right-handed alpha
Helix 19
AC1
C
99 103Right-handed 310
Helix 20
AC2
C
141 147Right-handed alpha
Helix 21
AC3
C
202 208Right-handed alpha
Helix 22
AC4
D
47 51Right-handed 310
Helix 23
AC5
D
106 110Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 8DL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
82 87anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
122 126parallel
Strand 3
C
105 110anti-parallel
Strand 4
C
53 58anti-parallel
Strand 5
C
65 69anti-parallel
Strand 6
C
73 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 138first strand
Strand 2
C
150 159anti-parallel
Strand 3
C
193 201anti-parallel
Strand 4
C
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 170first strand
Strand 2
C
211 217anti-parallel
Strand 3
C
225 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
36 44anti-parallel
Strand 3
D
97 103anti-parallel
Strand 4
D
87 92anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 31first strand
Strand 2
D
133 137parallel
Strand 3
D
111 118anti-parallel
Strand 4
D
52 58anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 149first strand
Strand 2
D
163 170anti-parallel
Strand 3
D
199 206anti-parallel
Strand 4
D
188 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 179first strand
Strand 2
D
219 223anti-parallel
Strand 3
D
231 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il