Analysis of interatomic Contacts of Structural Units in PDB entry:
8DLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DLE entry

There are 2 chains in PDB entry 8DLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 382
B
 SER 1GLN 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8DLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
51 54Right-handed 310
Helix 3
AA3
A
55 70Right-handed alpha
Helix 4
AA4
A
83 98Right-handed alpha
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
154 163Right-handed alpha
Helix 8
AA8
A
186 197Right-handed alpha
Helix 9
AA9
A
213 217Right-handed 310
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
248 259Right-handed alpha
Helix 12
AB3
A
259 265Right-handed alpha
Helix 13
AB4
A
269 285Right-handed alpha
Helix 14
AB5
A
285 306Right-handed alpha
Helix 15
AB6
A
327 341Right-handed alpha
Helix 16
AB7
A
369 382Right-handed alpha
Helix 17
AB8
B
2 16Right-handed alpha
Helix 18
AB9
B
35 49Right-handed alpha
Helix 19
AC1
B
55 62Right-handed alpha
Helix 20
AC2
B
64 76Right-handed alpha
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There are 3 sheets in PDB entry 8DLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
343 344parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
229 233anti-parallel
Strand 4
A
200 204parallel
Strand 5
A
170 175parallel
Strand 6
A
125 129parallel
Strand 7
A
146 150parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
359 361anti-parallel
Strand 3
A
346 348anti-parallel
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