Analysis of interatomic Contacts of Structural Units in PDB entry:
8DLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DLF entry

There are 6 chains in PDB entry 8DLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 458ALA 617
B
 ARG 459GLU 615
C
 ARG 458VAL 614
D
 LYS 461ALA 617
E
 A 1 C 56
F
 G 1 T 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8DLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
475 490Right-handed alpha
Helix 2
AA2
A
513 526Right-handed alpha
Helix 3
AA3
A
568 585Right-handed alpha
Helix 4
AA4
A
587 591Right-handed 310
Helix 5
AA5
A
612 616Right-handed 310
Helix 6
AA6
B
475 490Right-handed alpha
Helix 7
AA7
B
513 528Right-handed alpha
Helix 8
AA8
B
569 585Right-handed alpha
Helix 9
AA9
B
587 591Right-handed 310
Helix 10
AB1
C
475 489Right-handed alpha
Helix 11
AB2
C
513 528Right-handed alpha
Helix 12
AB3
C
569 585Right-handed alpha
Helix 13
AB4
C
587 593Right-handed 310
Helix 14
AB5
D
475 490Right-handed alpha
Helix 15
AB6
D
513 526Right-handed alpha
Helix 16
AB7
D
568 586Right-handed alpha
Helix 17
AB8
D
610 614Right-handed 310
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There are 5 sheets in PDB entry 8DLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 510first strand
Strand 2
A
556 566anti-parallel
Strand 3
A
536 540anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 533first strand
Strand 2
B
556 565anti-parallel
Strand 3
B
537 540anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 533first strand
Strand 2
B
556 565anti-parallel
Strand 3
B
505 511anti-parallel
Strand 4
B
593 599anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
532 533first strand
Strand 2
C
561 565anti-parallel
Strand 3
C
505 510anti-parallel
Strand 4
C
594 599anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
537 540first strand
Strand 2
D
556 565anti-parallel
Strand 3
D
506 511anti-parallel
Strand 4
D
593 594anti-parallel
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