Analysis of interatomic Contacts of Structural Units in PDB entry:
8DLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DLR entry

There are 3 chains in PDB entry 8DLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14PHE 306
H
 VAL 21ALA 145
L
 TYR 22GLY 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8DLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
147 149Right-handed 310
Helix 2
AA2
A
294 304Right-handed alpha
Helix 3
AA3
H
46 50Right-handed 310
Helix 4
AA4
H
106 110Right-handed 310
Helix 5
AA5
H
124 129Right-handed 310
Helix 6
AA6
L
46 50Right-handed 310
Helix 7
AA7
L
98 102Right-handed 310
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There are 10 sheets in PDB entry 8DLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
90 95anti-parallel
Strand 5
A
188 197anti-parallel
Strand 6
A
200 209anti-parallel
Strand 7
A
224 230anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
126 145anti-parallel
Strand 6
A
153 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
126 145parallel
Strand 4
A
153 172anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
24 25first strand
Strand 2
H
37 42anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
138 142parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
52 58anti-parallel
Strand 5
H
64 71anti-parallel
Strand 6
H
76 79anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
138 142parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
133 134anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
24 25first strand
Strand 2
L
38 44anti-parallel
Strand 3
L
89 94anti-parallel
Strand 4
L
81 86anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
121 125parallel
Strand 3
L
103 111anti-parallel
Strand 4
L
52 57anti-parallel
Strand 5
L
63 67anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
121 125parallel
Strand 3
L
103 111anti-parallel
Strand 4
L
114 117anti-parallel
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