Analysis of interatomic Contacts of Structural Units in PDB entry:
8DM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DM6 entry

There are 2 chains in PDB entry 8DM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 330	SER 530
D	SER 19	TYR 613

There are 38 helices in PDB entry 8DM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	365	371	Right-handed alpha
Helix 3	AA3	A	384	388	Right-handed 310
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	D	20	53	Right-handed alpha
Helix 8	AA8	D	55	81	Right-handed alpha
Helix 9	AA9	D	90	101	Right-handed alpha
Helix 10	AB1	D	103	108	Right-handed 310
Helix 11	AB2	D	109	129	Right-handed alpha
Helix 12	AB3	D	147	155	Right-handed alpha
Helix 13	AB4	D	157	194	Right-handed alpha
Helix 14	AB5	D	198	205	Right-handed alpha
Helix 15	AB6	D	206	208	Right-handed 310
Helix 16	AB7	D	220	252	Right-handed alpha
Helix 17	AB8	D	265	267	Right-handed 310
Helix 18	AB9	D	275	279	Right-handed 310
Helix 19	AC1	D	293	300	Right-handed alpha
Helix 20	AC2	D	303	318	Right-handed alpha
Helix 21	AC3	D	324	331	Right-handed alpha
Helix 22	AC4	D	365	385	Right-handed alpha
Helix 23	AC5	D	386	388	Right-handed 310
Helix 24	AC6	D	389	393	Right-handed 310
Helix 25	AC7	D	397	413	Right-handed alpha
Helix 26	AC8	D	414	421	Right-handed alpha
Helix 27	AC9	D	431	447	Right-handed alpha
Helix 28	AD1	D	448	466	Right-handed alpha
Helix 29	AD2	D	469	471	Right-handed 310
Helix 30	AD3	D	472	484	Right-handed alpha
Helix 31	AD4	D	499	502	Right-handed 310
Helix 32	AD5	D	503	508	Right-handed alpha
Helix 33	AD6	D	512	533	Right-handed alpha
Helix 34	AD7	D	538	542	Right-handed 310
Helix 35	AD8	D	547	559	Right-handed alpha
Helix 36	AD9	D	565	575	Right-handed alpha
Helix 37	AE1	D	581	588	Right-handed alpha
Helix 38	AE2	D	588	599	Right-handed alpha

There are 6 sheets in PDB entry 8DM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	374	376	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	379	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	355	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DM6