Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DMF entry

There is 1 chain in PDB entry 8DMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8DMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 7Right-handed 310
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
87 98Right-handed alpha
Helix 5
AA5
A
112 126Right-handed alpha
Helix 6
AA6
A
142 154Right-handed alpha
Helix 7
AA7
A
167 171Right-handed 310
Helix 8
AA8
A
198 200Right-handed 310
Helix 9
AA9
A
201 220Right-handed alpha
Helix 10
AB1
A
235 248Right-handed alpha
Helix 11
AB2
A
264 275Right-handed alpha
Helix 12
AB3
A
411 426Right-handed alpha
Helix 13
AB4
A
446 459Right-handed alpha
Helix 14
AB5
A
555 557Right-handed 310
Helix 15
AB6
A
558 571Right-handed alpha
Helix 16
AB7
A
598 617Right-handed alpha
Helix 17
AB8
A
636 646Right-handed alpha
Helix 18
AB9
A
670 672Right-handed 310
Helix 19
AC1
A
674 684Right-handed alpha
Helix 20
AC2
A
700 716Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8DMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
9 15parallel
Strand 4
A
100 106parallel
Strand 5
A
129 134parallel
Strand 6
A
253 256parallel
Strand 7
A
159 160parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
181 184anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
332 335anti-parallel
Strand 3
A
380 382anti-parallel
Strand 4
A
302 304anti-parallel
Strand 5
A
318 324anti-parallel
Strand 6
A
366 369anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
355 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 434first strand
Strand 2
A
439 444anti-parallel
Strand 3
A
400 406anti-parallel
Strand 4
A
465 468anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
475 478parallel
Strand 3
A
619 622anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 488first strand
Strand 2
A
499 507anti-parallel
Strand 3
A
583 590anti-parallel
Strand 4
A
542 544parallel
Strand 5
A
534 536anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 654first strand
Strand 2
A
660 668anti-parallel
Strand 3
A
625 633anti-parallel
Strand 4
A
691 693anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il