Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMG entry

There are 2 chains in PDB entry 8DMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLY 1048
B	LYS 3	GLY 1048

There are 97 helices in PDB entry 8DMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	16	21	Right-handed 310
Helix 3	AA3	A	24	37	Right-handed alpha
Helix 4	AA4	A	54	62	Right-handed alpha
Helix 5	AA5	A	72	83	Right-handed alpha
Helix 6	AA6	A	93	104	Right-handed alpha
Helix 7	AA7	A	105	107	Right-handed 310
Helix 8	AA8	A	108	132	Right-handed alpha
Helix 9	AA9	A	141	159	Right-handed alpha
Helix 10	AB1	A	163	167	Right-handed 310
Helix 11	AB2	A	171	188	Right-handed alpha
Helix 12	AB3	A	195	197	Right-handed 310
Helix 13	AB4	A	198	226	Right-handed alpha
Helix 14	AB5	A	232	240	Right-handed alpha
Helix 15	AB6	A	250	265	Right-handed alpha
Helix 16	AB7	A	266	283	Right-handed alpha
Helix 17	AB8	A	283	298	Right-handed alpha
Helix 18	AB9	A	304	311	Right-handed alpha
Helix 19	AC1	A	311	325	Right-handed alpha
Helix 20	AC2	A	357	361	Right-handed alpha
Helix 21	AC3	A	363	368	Right-handed alpha
Helix 22	AC4	A	375	380	Right-handed 310
Helix 23	AC5	A	381	385	Right-handed 310
Helix 24	AC6	A	395	399	Right-handed 310
Helix 25	AC7	A	402	420	Right-handed alpha
Helix 26	AC8	A	491	506	Right-handed alpha
Helix 27	AC9	A	517	519	Right-handed 310
Helix 28	AD1	A	544	553	Right-handed alpha
Helix 29	AD2	A	574	578	Right-handed 310
Helix 30	AD3	A	579	591	Right-handed alpha
Helix 31	AD4	A	608	628	Right-handed alpha
Helix 32	AD5	A	653	659	Right-handed alpha
Helix 33	AD6	A	707	719	Right-handed alpha
Helix 34	AD7	A	746	750	Right-handed alpha
Helix 35	AD8	A	751	753	Right-handed 310
Helix 36	AD9	A	760	770	Right-handed alpha
Helix 37	AE1	A	773	783	Right-handed alpha
Helix 38	AE2	A	785	793	Right-handed alpha
Helix 39	AE3	A	799	807	Right-handed alpha
Helix 40	AE4	A	813	820	Right-handed alpha
Helix 41	AE5	A	862	871	Right-handed alpha
Helix 42	AE6	A	903	905	Right-handed 310
Helix 43	AE7	A	906	923	Right-handed alpha
Helix 44	AE8	A	945	955	Right-handed alpha
Helix 45	AE9	A	974	982	Right-handed alpha
Helix 46	AF1	A	982	992	Right-handed alpha
Helix 47	AF2	A	1004	1021	Right-handed alpha
Helix 48	AF3	A	1024	1036	Right-handed alpha
Helix 49	AF4	B	11	15	Right-handed 310
Helix 50	AF5	B	16	21	Right-handed 310
Helix 51	AF6	B	24	37	Right-handed alpha
Helix 52	AF7	B	54	62	Right-handed alpha
Helix 53	AF8	B	72	83	Right-handed alpha
Helix 54	AF9	B	93	104	Right-handed alpha
Helix 55	AG1	B	105	107	Right-handed 310
Helix 56	AG2	B	108	132	Right-handed alpha
Helix 57	AG3	B	141	159	Right-handed alpha
Helix 58	AG4	B	163	167	Right-handed 310
Helix 59	AG5	B	171	188	Right-handed alpha
Helix 60	AG6	B	195	197	Right-handed 310
Helix 61	AG7	B	198	226	Right-handed alpha
Helix 62	AG8	B	232	240	Right-handed alpha
Helix 63	AG9	B	250	265	Right-handed alpha
Helix 64	AH1	B	266	283	Right-handed alpha
Helix 65	AH2	B	283	298	Right-handed alpha
Helix 66	AH3	B	304	311	Right-handed alpha
Helix 67	AH4	B	311	325	Right-handed alpha
Helix 68	AH5	B	357	361	Right-handed alpha
Helix 69	AH6	B	363	368	Right-handed alpha
Helix 70	AH7	B	375	380	Right-handed 310
Helix 71	AH8	B	381	385	Right-handed 310
Helix 72	AH9	B	395	399	Right-handed 310
Helix 73	AI1	B	402	420	Right-handed alpha
Helix 74	AI2	B	491	506	Right-handed alpha
Helix 75	AI3	B	517	519	Right-handed 310
Helix 76	AI4	B	544	553	Right-handed alpha
Helix 77	AI5	B	574	578	Right-handed 310
Helix 78	AI6	B	579	591	Right-handed alpha
Helix 79	AI7	B	608	628	Right-handed alpha
Helix 80	AI8	B	634	638	Right-handed 310
Helix 81	AI9	B	653	659	Right-handed alpha
Helix 82	AJ1	B	707	719	Right-handed alpha
Helix 83	AJ2	B	746	750	Right-handed alpha
Helix 84	AJ3	B	751	753	Right-handed 310
Helix 85	AJ4	B	760	770	Right-handed alpha
Helix 86	AJ5	B	773	783	Right-handed alpha
Helix 87	AJ6	B	785	793	Right-handed alpha
Helix 88	AJ7	B	799	807	Right-handed alpha
Helix 89	AJ8	B	813	820	Right-handed alpha
Helix 90	AJ9	B	862	871	Right-handed alpha
Helix 91	AK1	B	903	905	Right-handed 310
Helix 92	AK2	B	906	923	Right-handed alpha
Helix 93	AK3	B	945	955	Right-handed alpha
Helix 94	AK4	B	974	982	Right-handed alpha
Helix 95	AK5	B	982	992	Right-handed alpha
Helix 96	AK6	B	1004	1021	Right-handed alpha
Helix 97	AK7	B	1024	1036	Right-handed alpha

There are 18 sheets in PDB entry 8DMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	352	356	parallel
Strand 4	A	330	335	anti-parallel
Strand 5	A	67	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	445	450	anti-parallel
Strand 3	A	421	424	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	345	347	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	439	441	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	515	first strand
Strand 2	A	482	487	parallel
Strand 3	A	528	533	parallel
Strand 4	A	564	570	parallel
Strand 5	A	598	604	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	827	830	first strand
Strand 2	A	699	703	anti-parallel
Strand 3	A	876	882	anti-parallel
Strand 4	A	662	671	anti-parallel
Strand 5	A	681	687	anti-parallel
Strand 6	A	841	847	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	745	first strand
Strand 2	A	725	729	anti-parallel
Strand 3	B	644	645	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	859	861	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	964	first strand
Strand 2	A	930	936	parallel
Strand 3	A	898	901	parallel
Strand 4	A	995	998	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	352	356	parallel
Strand 4	B	330	335	anti-parallel
Strand 5	B	67	70	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	445	450	anti-parallel
Strand 3	B	421	424	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	439	441	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	515	first strand
Strand 2	B	482	487	parallel
Strand 3	B	528	533	parallel
Strand 4	B	564	570	parallel
Strand 5	B	598	604	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	827	830	first strand
Strand 2	B	699	703	anti-parallel
Strand 3	B	876	882	anti-parallel
Strand 4	B	662	671	anti-parallel
Strand 5	B	681	687	anti-parallel
Strand 6	B	841	847	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	727	first strand
Strand 2	B	743	745	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	859	861	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	959	964	first strand
Strand 2	B	930	936	parallel
Strand 3	B	898	901	parallel
Strand 4	B	995	1001	parallel
Strand 5	B	1041	1046	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMG