Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMH entry

There are 12 chains in PDB entry 8DMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 66	THR 261
E	ASP 1	ILE 108
F	VAL 3	SER 123
a	THR 267	LYS 427
B	ASP 66	THR 261
G	ASP 1	ILE 108
H	VAL 3	SER 123
b	THR 267	LYS 427
C	ASP 66	THR 261
I	ASP 1	ILE 108
J	VAL 3	SER 123
c	THR 267	LYS 427

There are 45 helices in PDB entry 8DMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	135	147	Right-handed alpha
Helix 3	AA3	A	186	200	Right-handed alpha
Helix 4	AA4	A	207	212	Right-handed 310
Helix 5	AA5	A	244	254	Right-handed alpha
Helix 6	AA6	E	30	32	Right-handed 310
Helix 7	AA7	F	89	93	Right-handed 310
Helix 8	AA8	a	300	308	Right-handed alpha
Helix 9	AA9	a	313	332	Right-handed alpha
Helix 10	AB1	a	335	346	Right-handed alpha
Helix 11	AB2	a	347	351	Right-handed 310
Helix 12	AB3	a	352	365	Right-handed alpha
Helix 13	AB4	a	401	404	Right-handed 310
Helix 14	AB5	a	405	427	Right-handed alpha
Helix 15	AB6	B	125	130	Right-handed alpha
Helix 16	AB7	B	135	147	Right-handed alpha
Helix 17	AB8	B	186	200	Right-handed alpha
Helix 18	AB9	B	244	252	Right-handed alpha
Helix 19	AC1	G	30	32	Right-handed 310
Helix 20	AC2	H	89	93	Right-handed 310
Helix 21	AC3	b	287	291	Right-handed 310
Helix 22	AC4	b	300	308	Right-handed alpha
Helix 23	AC5	b	313	332	Right-handed alpha
Helix 24	AC6	b	335	346	Right-handed alpha
Helix 25	AC7	b	347	351	Right-handed 310
Helix 26	AC8	b	352	365	Right-handed alpha
Helix 27	AC9	b	401	404	Right-handed 310
Helix 28	AD1	b	405	427	Right-handed alpha
Helix 29	AD2	C	135	147	Right-handed alpha
Helix 30	AD3	C	186	200	Right-handed alpha
Helix 31	AD4	C	207	211	Right-handed 310
Helix 32	AD5	C	244	253	Right-handed alpha
Helix 33	AD6	I	30	32	Right-handed 310
Helix 34	AD7	I	51	53	Right-handed 310
Helix 35	AD8	I	80	84	Right-handed 310
Helix 36	AD9	J	29	33	Right-handed 310
Helix 37	AE1	J	89	93	Right-handed 310
Helix 38	AE2	c	287	291	Right-handed 310
Helix 39	AE3	c	300	310	Right-handed alpha
Helix 40	AE4	c	313	332	Right-handed alpha
Helix 41	AE5	c	335	346	Right-handed alpha
Helix 42	AE6	c	347	351	Right-handed 310
Helix 43	AE7	c	352	365	Right-handed alpha
Helix 44	AE8	c	401	404	Right-handed 310
Helix 45	AE9	c	405	427	Right-handed alpha

There are 26 sheets in PDB entry 8DMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	a	374	380	anti-parallel
Strand 4	a	390	391	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	227	234	anti-parallel
Strand 5	A	167	170	anti-parallel
Strand 6	A	158	161	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	104	107	parallel
Strand 3	E	86	92	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	104	107	parallel
Strand 3	E	86	92	anti-parallel
Strand 4	E	98	100	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	118	122	parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	23	first strand
Strand 2	F	80	85	anti-parallel
Strand 3	F	70	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	394	395	first strand
Strand 2	a	398	399	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	b	374	380	anti-parallel
Strand 4	b	390	391	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	228	232	anti-parallel
Strand 5	B	167	170	anti-parallel
Strand 6	B	158	161	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	63	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	104	107	parallel
Strand 3	G	86	92	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	50	anti-parallel
Strand 6	G	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	104	107	parallel
Strand 3	G	86	92	anti-parallel
Strand 4	G	98	100	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	118	122	parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	80	83	anti-parallel
Strand 3	H	72	75	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	285	286	first strand
Strand 2	b	297	298	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	394	395	first strand
Strand 2	b	398	399	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	72	78	anti-parallel
Strand 3	c	374	380	anti-parallel
Strand 4	c	390	391	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	93	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	106	113	anti-parallel
Strand 4	C	227	232	anti-parallel
Strand 5	C	167	170	anti-parallel
Strand 6	C	158	161	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	71	76	anti-parallel
Strand 4	I	63	65	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	104	107	parallel
Strand 3	I	86	92	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	43	50	anti-parallel
Strand 6	I	54	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	104	107	parallel
Strand 3	I	86	92	anti-parallel
Strand 4	I	98	100	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	8	first strand
Strand 2	J	21	23	anti-parallel
Strand 3	J	80	85	anti-parallel
Strand 4	J	70	75	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	118	121	parallel
Strand 3	J	94	101	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	60	62	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	285	286	first strand
Strand 2	c	297	298	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	394	395	first strand
Strand 2	c	398	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMH