Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMI entry

There are 6 chains in PDB entry 8DMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 67	LYS 256
a	TRP 270	ILE 426
B	ILE 67	LYS 256
b	TRP 270	ILE 426
C	ILE 67	LYS 256
c	TRP 270	ILE 426

There are 24 helices in PDB entry 8DMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	136	148	Right-handed alpha
Helix 2	AA2	A	186	200	Right-handed alpha
Helix 3	AA3	A	244	253	Right-handed alpha
Helix 4	AA4	a	300	307	Right-handed alpha
Helix 5	AA5	a	313	330	Right-handed alpha
Helix 6	AA6	a	335	346	Right-handed alpha
Helix 7	AA7	a	352	365	Right-handed alpha
Helix 8	AA8	a	405	426	Right-handed alpha
Helix 9	AA9	B	136	148	Right-handed alpha
Helix 10	AB1	B	186	200	Right-handed alpha
Helix 11	AB2	B	244	253	Right-handed alpha
Helix 12	AB3	b	300	307	Right-handed alpha
Helix 13	AB4	b	313	330	Right-handed alpha
Helix 14	AB5	b	335	346	Right-handed alpha
Helix 15	AB6	b	352	365	Right-handed alpha
Helix 16	AB7	b	405	426	Right-handed alpha
Helix 17	AB8	C	136	148	Right-handed alpha
Helix 18	AB9	C	186	200	Right-handed alpha
Helix 19	AC1	C	244	253	Right-handed alpha
Helix 20	AC2	c	300	307	Right-handed alpha
Helix 21	AC3	c	313	330	Right-handed alpha
Helix 22	AC4	c	335	346	Right-handed alpha
Helix 23	AC5	c	352	365	Right-handed alpha
Helix 24	AC6	c	405	426	Right-handed alpha

There are 9 sheets in PDB entry 8DMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	78	first strand
Strand 2	a	374	380	anti-parallel
Strand 3	a	390	391	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	228	232	anti-parallel
Strand 5	A	167	170	anti-parallel
Strand 6	A	158	161	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	394	395	first strand
Strand 2	a	398	399	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	78	first strand
Strand 2	b	374	380	anti-parallel
Strand 3	b	390	391	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	228	232	anti-parallel
Strand 5	B	167	170	anti-parallel
Strand 6	B	158	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	394	395	first strand
Strand 2	b	398	399	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	78	first strand
Strand 2	c	374	380	anti-parallel
Strand 3	c	390	391	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	98	103	anti-parallel
Strand 3	C	106	111	anti-parallel
Strand 4	C	228	232	anti-parallel
Strand 5	C	167	170	anti-parallel
Strand 6	C	158	161	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	394	395	first strand
Strand 2	c	398	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMI