Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DMJ entry

There are 7 chains in PDB entry 8DMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ALA 444
B	ILE 27	ALA 444
C	ILE 27	ALA 444
D	ALA 1	SER 113
E	ALA 1	LYS 107
H	ALA 1	SER 113
L	ALA 1	LYS 107

There are 36 helices in PDB entry 8DMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	72	93	Right-handed alpha
Helix 3	AA3	A	190	220	Right-handed alpha
Helix 4	AA4	A	227	234	Right-handed alpha
Helix 5	AA5	A	238	247	Right-handed alpha
Helix 6	AA6	A	249	260	Right-handed alpha
Helix 7	AA7	A	328	331	Right-handed 310
Helix 8	AA8	A	349	358	Right-handed alpha
Helix 9	AA9	A	359	363	Right-handed 310
Helix 10	AB1	B	29	35	Right-handed alpha
Helix 11	AB2	B	74	93	Right-handed alpha
Helix 12	AB3	B	190	214	Right-handed alpha
Helix 13	AB4	B	214	220	Right-handed alpha
Helix 14	AB5	B	227	234	Right-handed alpha
Helix 15	AB6	B	238	246	Right-handed alpha
Helix 16	AB7	B	249	259	Right-handed alpha
Helix 17	AB8	B	328	331	Right-handed 310
Helix 18	AB9	B	349	358	Right-handed alpha
Helix 19	AC1	B	359	363	Right-handed 310
Helix 20	AC2	C	29	35	Right-handed alpha
Helix 21	AC3	C	72	93	Right-handed alpha
Helix 22	AC4	C	190	214	Right-handed alpha
Helix 23	AC5	C	214	220	Right-handed alpha
Helix 24	AC6	C	227	234	Right-handed alpha
Helix 25	AC7	C	238	247	Right-handed alpha
Helix 26	AC8	C	249	260	Right-handed alpha
Helix 27	AC9	C	328	331	Right-handed 310
Helix 28	AD1	C	349	358	Right-handed alpha
Helix 29	AD2	C	359	363	Right-handed 310
Helix 30	AD3	D	61	64	Right-handed 310
Helix 31	AD4	D	83	87	Right-handed 310
Helix 32	AD5	E	79	83	Right-handed 310
Helix 33	AD6	H	61	64	Right-handed 310
Helix 34	AD7	H	73	75	Right-handed 310
Helix 35	AD8	H	83	87	Right-handed 310
Helix 36	AD9	L	79	83	Right-handed 310

There are 24 sheets in PDB entry 8DMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	285	298	anti-parallel
Strand 5	A	315	319	anti-parallel
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	347	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	282	anti-parallel
Strand 4	A	53	60	anti-parallel
Strand 5	C	432	437	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	310	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	382	385	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	437	first strand
Strand 2	B	53	60	parallel
Strand 3	B	275	282	anti-parallel
Strand 4	B	263	270	anti-parallel
Strand 5	B	224	225	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	337	340	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	285	298	anti-parallel
Strand 5	B	315	319	anti-parallel
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	310	anti-parallel
Strand 3	B	365	367	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	410	412	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	425	428	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	437	first strand
Strand 2	C	53	60	parallel
Strand 3	C	275	282	anti-parallel
Strand 4	C	263	270	anti-parallel
Strand 5	C	224	225	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	39	48	parallel
Strand 4	C	287	297	anti-parallel
Strand 5	C	315	319	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	410	413	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	419	422	anti-parallel
Strand 3	C	425	428	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	69	72	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	50	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DMJ