Analysis of interatomic Contacts of Structural Units in PDB entry:
8DML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DML entry

There are 6 chains in PDB entry 8DML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 165	TYR 253
B	GLN 29	TYR 161
C	ASP 164	TYR 253
D	GLN 29	TYR 161
E	ASP 165	TYR 253
F	ASP 30	VAL 106

There are 19 helices in PDB entry 8DML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	182	201	Right-handed alpha
Helix 2	AA2	A	239	253	Right-handed alpha
Helix 3	AA3	B	121	126	Right-handed alpha
Helix 4	AA4	B	127	130	Right-handed 310
Helix 5	AA5	B	149	153	Right-handed 310
Helix 6	AA6	C	182	201	Right-handed alpha
Helix 7	AA7	C	239	253	Right-handed alpha
Helix 8	AA8	D	111	115	Right-handed 310
Helix 9	AA9	D	121	129	Right-handed alpha
Helix 10	AB1	D	149	153	Right-handed 310
Helix 11	AB2	E	182	200	Right-handed alpha
Helix 12	AB3	E	239	253	Right-handed alpha
Helix 13	AB4	F	111	115	Right-handed 310
Helix 14	AB5	F	121	126	Right-handed alpha
Helix 15	AB6	F	149	153	Right-handed 310
Helix 16	AB7	G	182	200	Right-handed alpha
Helix 17	AB8	G	239	253	Right-handed alpha
Helix 18	AB9	H	121	126	Right-handed alpha
Helix 19	AC1	H	149	153	Right-handed 310

There are 8 sheets in PDB entry 8DML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	A	206	211	parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	228	233	anti-parallel
Strand 6	B	32	42	parallel
Strand 7	B	49	59	anti-parallel
Strand 8	B	62	72	anti-parallel
Strand 9	B	77	93	anti-parallel
Strand 10	B	96	109	anti-parallel
Strand 11	B	116	118	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	A	206	211	parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	228	233	anti-parallel
Strand 6	B	32	42	parallel
Strand 7	B	154	161	anti-parallel
Strand 8	B	143	148	anti-parallel
Strand 9	B	132	139	anti-parallel
Strand 10	B	96	109	anti-parallel
Strand 11	B	116	118	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	176	179	anti-parallel
Strand 3	C	206	212	parallel
Strand 4	C	215	221	anti-parallel
Strand 5	C	227	233	anti-parallel
Strand 6	D	33	42	parallel
Strand 7	D	49	59	anti-parallel
Strand 8	D	62	72	anti-parallel
Strand 9	D	77	91	anti-parallel
Strand 10	D	96	109	anti-parallel
Strand 11	D	116	117	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	176	179	anti-parallel
Strand 3	C	206	212	parallel
Strand 4	C	215	221	anti-parallel
Strand 5	C	227	233	anti-parallel
Strand 6	D	33	42	parallel
Strand 7	D	154	161	anti-parallel
Strand 8	D	143	148	anti-parallel
Strand 9	D	132	139	anti-parallel
Strand 10	D	96	109	anti-parallel
Strand 11	D	116	117	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	176	179	anti-parallel
Strand 3	E	206	211	parallel
Strand 4	E	215	221	anti-parallel
Strand 5	E	227	233	anti-parallel
Strand 6	F	32	42	parallel
Strand 7	F	48	59	anti-parallel
Strand 8	F	62	73	anti-parallel
Strand 9	F	76	93	anti-parallel
Strand 10	F	96	109	anti-parallel
Strand 11	F	116	118	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	176	179	anti-parallel
Strand 3	E	206	211	parallel
Strand 4	E	215	221	anti-parallel
Strand 5	E	227	233	anti-parallel
Strand 6	F	32	42	parallel
Strand 7	F	154	161	anti-parallel
Strand 8	F	143	148	anti-parallel
Strand 9	F	133	139	anti-parallel
Strand 10	F	96	109	anti-parallel
Strand 11	F	116	118	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	176	179	anti-parallel
Strand 3	G	206	211	parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	227	233	anti-parallel
Strand 6	H	32	42	parallel
Strand 7	H	48	59	anti-parallel
Strand 8	H	62	73	anti-parallel
Strand 9	H	76	93	anti-parallel
Strand 10	H	96	109	anti-parallel
Strand 11	H	116	117	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	176	179	anti-parallel
Strand 3	G	206	211	parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	227	233	anti-parallel
Strand 6	H	32	42	parallel
Strand 7	H	154	161	anti-parallel
Strand 8	H	143	148	anti-parallel
Strand 9	H	133	139	anti-parallel
Strand 10	H	96	109	anti-parallel
Strand 11	H	116	117	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8DML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DML